View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_5 (Length: 517)
Name: NF15062_high_5
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 100 - 486
Target Start/End: Original strand, 38262127 - 38262514
Alignment:
| Q |
100 |
gtaattgattagactcgaaaatggacaaaacaacaaaaccaatttaattggatttttgggttcatggagtcattagtttgattcttacaattaagctaga |
199 |
Q |
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| T |
38262127 |
gtaattgattagactcgaaaatggacaaaacaacaaaaccaatttaattggatttttgggttcatggagtcattagtttgattcttacaattaagctaga |
38262226 |
T |
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| Q |
200 |
tgcataatataaatagcataaattttttgttgcaaattagtttaattcttacacttaacctaaatagcataaaatttgtgttgcatataatcatttaaag |
299 |
Q |
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| T |
38262227 |
tgcatagtataaatagcataatttttttgttgcaaattagtttaattcttacacttaacctaaatagcatgaaatttgtgttgcatataatcatttaaag |
38262326 |
T |
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| Q |
300 |
tttggaaaatagattatatttcttacatactcttgtcttggttttagctattcaaatgagaaatcagaatcccgaaaatatgaggaagtgtcataaacaa |
399 |
Q |
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| T |
38262327 |
tttggaaaatagattatatttcttacatactcttgtcttggttttagctattcaaatgagaaatcagaatcccgaaaatatgaggaagtgtcataaacaa |
38262426 |
T |
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| Q |
400 |
gttcatct-cctcaagctagaattttaaatacccaataagaatgttgtaagattcttctcacatgttttaatgttctagagggtcctt |
486 |
Q |
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| T |
38262427 |
gttcatctacttcaagctagaattttaaataaccaataagaatgttgtaagattcttctgacatgttttaatgttctagagggtcctt |
38262514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 38261906 - 38261989
Alignment:
| Q |
19 |
attgtttagcactcctcaaactcacaaagcattaatgggaagcatcaagagtttgctggttagaaagcgaaaatattcaacgta |
102 |
Q |
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| T |
38261906 |
attgtttagcactcctcaaactcacaaagcattaatgggaagcatcaagagtttgctggttagaaagcgaaaatgttcaacgta |
38261989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 38241104 - 38241192
Alignment:
| Q |
310 |
agattatatttcttacatactcttgtcttggttttagctattcaaatgagaaatcagaatcccgaaaatatgaggaagtgtcataaaca |
398 |
Q |
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| T |
38241104 |
agattctatttcatacaaaatcttgttttgtttctaggtattcaaatgagaaatcagaatcccgaaaatctgaggaagtgtcagaaaca |
38241192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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