View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_6 (Length: 517)
Name: NF15062_high_6
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 249 - 513
Target Start/End: Original strand, 47258691 - 47258955
Alignment:
| Q |
249 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttttaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
348 |
Q |
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| T |
47258691 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttgtaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
47258790 |
T |
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| Q |
349 |
ggcttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
448 |
Q |
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| T |
47258791 |
ggtttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
47258890 |
T |
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| Q |
449 |
actcagcttctcttccctttcattcaatttgaggatatggaatggaattcatattcttttcactc |
513 |
Q |
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| T |
47258891 |
actcagcttctcttccctttcattcaatttgaggatatggaatgaaattcatattcttttcactc |
47258955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 47258473 - 47258644
Alignment:
| Q |
19 |
aatgtgtgtgcttcatatgtcacaagtaacaattatttttgcattagaaatgtaaacagtaatcgattggctataactaagagtatacgattgaatgaag |
118 |
Q |
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| T |
47258473 |
aatgtgtgtgcttcatatgtcacaagtaacaattatttttgcattagaaatgtaaacagtaatcgattggctataactaagagtatacgattgaatgaag |
47258572 |
T |
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| Q |
119 |
tttgatacattaacatcagaacaaagttaaaagaataaaaaggaagctaacatcagagaagtatgcaacaca |
190 |
Q |
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| T |
47258573 |
tttgatacattaacatcagaacaaagttaaaagaataaaaaggaagctaacatcagagaagtatgcagcaca |
47258644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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