View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_7 (Length: 486)
Name: NF15062_high_7
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 37114084 - 37113612
Alignment:
| Q |
18 |
cttatcttttaatgatgcatgtaacaaacataatatattattattaacagtattctccggctaattccttaacaaattcttcgtaacctcacgcaacaag |
117 |
Q |
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| T |
37114084 |
cttatcttttaatgatgcatgtaacaaacataatatattattattaacagtattctccggctaattccttaacaaattcttcgtaacctcacgcaacaag |
37113985 |
T |
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| Q |
118 |
aagtgcgaatttcacggtgcttattatcgcaaaaataagcaacatatactgtatatat----taccaaactattaactcactcacctgcattcaaaagaa |
213 |
Q |
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| T |
37113984 |
aagtgcgaatttcatggtgcttaatatcgcaaaaataagcaacatttactgtatatatatattaccaaactattaactcactcacctgcattcaaaagaa |
37113885 |
T |
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| Q |
214 |
actactctactgatacaagtttctttagtgaaaataggaacatggcggttggagaggtggtcgatggcggcggagtacgtaggagaggatgtacgtttcn |
313 |
Q |
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| T |
37113884 |
actactctactgatacaagcttctttagtgaaaataggaacatggcggttggagaggtggtcgatggcggcggagtacgtaggagaggatgtacgtttca |
37113785 |
T |
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| Q |
314 |
nnnnnncgacttcttcccagaggagtcgtttaagagttgggaaaactatggaaaatctgtcatggaaacaccttaccggttgaaggatcgtttgttgaaa |
413 |
Q |
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| T |
37113784 |
aaaaaacgacttcttcccagaggagtcgtttaagagttgggaaaactatggaaaatctgtcatggaaacaccttaccggttgaaggatcgtttgttgaaa |
37113685 |
T |
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| Q |
414 |
cgatccagtgatcatgcagagctggtggagattaaggctaggagtgggaatgagatgaagaagacactgaatt |
486 |
Q |
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| T |
37113684 |
cgatccagtgatcatgcagagctggtggagattaaggctaggagtgggaatgagatgaagaagacactgaatt |
37113612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 230 - 484
Target Start/End: Complemental strand, 37126609 - 37126352
Alignment:
| Q |
230 |
aagtttctttagtgaaaataggaacatggcggttggagaggtg---gtcgatggcggcggagtacgtaggagaggatgtacgtttcnnnnnnncgacttc |
326 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| | || ||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
37126609 |
aagtttctttagtgaaaacaggaacatggcggttggagaggtggctgacggaggcggaggagtacgtagaagaggatgtacgtttcaaacaaacgacttc |
37126510 |
T |
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| Q |
327 |
ttcccagaggagtcgtttaagagttgggaaaactatggaaaatctgtcatggaaacaccttaccggttgaaggatcgtttgttgaaacgatccagtgatc |
426 |
Q |
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| T |
37126509 |
ttcccggaggagtcgtttaagagttgggaaaactatggaaaatctgtcatggaaacaccttaccggttgaaggatcgtttgttgaaacgatccagtgatc |
37126410 |
T |
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| Q |
427 |
atgcagagctggtggagattaaggctaggagtgggaatgagatgaagaagacactgaa |
484 |
Q |
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| T |
37126409 |
atgcagagctggtggagattaaggctaggagtgggaatgagatgaagaagacgctgaa |
37126352 |
T |
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