View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_high_9 (Length: 418)
Name: NF15062_high_9
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 38406951 - 38407350
Alignment:
| Q |
1 |
ggtaggccgtataaatgaaatttattaagaatctactaaacggta--ttcatgcattggttttgctgttataatagcctactgtgttgcttgtagaaact |
98 |
Q |
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| T |
38406951 |
ggtaggccgtataaatgaaatttattaagaatctactaaacggtacattcatgcattggttttgctgttatcatagcttactgtgctgcttgtagaaact |
38407050 |
T |
|
| Q |
99 |
ttattgcagannnnnnnnacaggagatttcgttgcagctgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttgtgctgtgtag |
198 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407051 |
ttattgcagatttttat-acaggagatttcgttgcaactgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttgtgctgtgtag |
38407149 |
T |
|
| Q |
199 |
gcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttgagctccaattg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407150 |
gcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttgagctccaattg |
38407249 |
T |
|
| Q |
299 |
gcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatggaatcaacaatgttgaggaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38407250 |
gcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatgg-atcaacaatgttgaggaa |
38407348 |
T |
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