View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15062_low_1 (Length: 608)

Name: NF15062_low_1
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15062_low_1
NF15062_low_1
[»] chr7 (3 HSPs)
chr7 (1-491)||(5897561-5898054)
chr7 (171-232)||(5897053-5897114)
chr7 (561-590)||(5898124-5898153)
[»] chr1 (6 HSPs)
chr1 (40-125)||(28108129-28108215)
chr1 (71-154)||(46916001-46916083)
chr1 (40-89)||(36979763-36979812)
chr1 (87-159)||(68997-69069)
chr1 (35-67)||(46878251-46878283)
chr1 (71-120)||(46518645-46518694)
[»] chr8 (2 HSPs)
chr8 (81-128)||(42456928-42456975)
chr8 (80-128)||(5920867-5920915)
[»] chr3 (3 HSPs)
chr3 (87-150)||(51380944-51381007)
chr3 (36-89)||(39028200-39028253)
chr3 (80-120)||(27844700-27844740)
[»] chr2 (5 HSPs)
chr2 (40-124)||(29699536-29699626)
chr2 (90-128)||(12037314-12037352)
chr2 (89-155)||(27249849-27249915)
chr2 (71-120)||(29923933-29923982)
chr2 (100-128)||(42013385-42013413)
[»] chr4 (3 HSPs)
chr4 (80-150)||(21512003-21512073)
chr4 (28-68)||(43148960-43149000)
chr4 (41-83)||(21512101-21512143)
[»] chr5 (3 HSPs)
chr5 (96-150)||(37283757-37283811)
chr5 (87-131)||(9379211-9379255)
chr5 (29-89)||(10315791-10315851)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 5897561 - 5898054
Alignment:
Q  1 taacacactataaagagagaaaagt---gtattcaactaagactgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccgatgaagtt 97  Q
    ||||||||||||||||||||||| |   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5897561 taacacactataaagagagaaaacttttgtattcaactaaggctgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccgatgaagtt 5897660  T
Q  98 atattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcctaaagagaaggtaattaagaaaacctgagcttggccttgtgc 197  Q
    |||||||||||||||||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  5897661 atattgataaattactggtgtttcttagcatcgagtgaaatgtgaacaacattattcctaaagagaaggtaataaagaaaacctgagcttggccttgggc 5897760  T
Q  198 ctgtccagcctgatagctcatctgttggggatccatctttgaaattataatgaaatgaatgaattgaatatcaagaataggtttgagatgaggattaaat 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5897761 ctgtccagcctgatagctcatctgttggggatccatctttgaaattgtaatgaaatgaatgaattgaatatcaagaacaggtttgagatgaggattaaat 5897860  T
Q  298 gtctagcattttactcatatatttataagtgagttctaaaaagaattacattgctcgagtttttagctaccacatgttcagagagccacgtggaatctta 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5897861 gtctagcattttactcatatatttataagtgagttctaaaaagaattacattgctcgagtttttagctaccacatgtttagagagccacgtggaatctta 5897960  T
Q  398 atatgttatttgagacgttttaatcggttgaccaagaaagttgtgtggatgataacttgttactattctcaggttgttaatttgatgcatggat 491  Q
    ||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5897961 atatgttctttgagacgttttaaccggtagaccaagaaagctgtgtggatgataacttgttactattctcaggttgttaatttgatgcatggat 5898054  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 5897053 - 5897114
Alignment:
Q  171 taagaaaacctgagcttggccttgtgcctgtccagcctgatagctcatctgttggggatcca 232  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||||    
T  5897053 taagaaaacctgagcttggccttgggcctgtccagtctcatagctcatctgttgggaatcca 5897114  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 590
Target Start/End: Original strand, 5898124 - 5898153
Alignment:
Q  561 gtaactaagttgagatcaaatagttgatga 590  Q
    ||||||||||||||||||||||||||||||    
T  5898124 gtaactaagttgagatcaaatagttgatga 5898153  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 28108215 - 28108129
Alignment:
Q  40 ctgaaacacaccagaaaaa-gacgtaaatgcacatcagcaattaattgccgatgaagttatattgataaattactggtgtttcctag 125  Q
    |||||||| |||||||||| ||||||||||  |||| | |  ||| ||||||||||||||||||| ||||||||| |||||||||||    
T  28108215 ctgaaacaaaccagaaaaaagacgtaaatgttcatcggtagctaactgccgatgaagttatattggtaaattactagtgtttcctag 28108129  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 46916001 - 46916083
Alignment:
Q  71 catcagcaattaattgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattc 154  Q
    |||| ||| |||| |||||||||| | |||||| |||||||||||||||||||| |||||| | || ||||| |||||||||||    
T  46916001 catctgcagttaactgccgatgaaat-atattggtaaattactggtgtttcctatcatcgagtgaaatgtgaacaacattattc 46916083  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 36979763 - 36979812
Alignment:
Q  40 ctgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccg 89  Q
    |||||||||||||||||||||||||||||   ||| ||||||||||||||    
T  36979763 ctgaaacacaccagaaaaagacgtaaatgttaatcggcaattaattgccg 36979812  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 68997 - 69069
Alignment:
Q  87 ccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcctaaa 159  Q
    ||||||| ||||||||||||||||||| |||| ||||||||| || | || ||||| ||||||| ||| ||||    
T  68997 ccgatgatgttatattgataaattactagtgtgtcctagcattgagtgaagtgtgaacaacattcttcataaa 69069  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 46878283 - 46878251
Alignment:
Q  35 taagactgaaacacaccagaaaaagacgtaaat 67  Q
    |||||||||||||||||||||||||||||||||    
T  46878283 taagactgaaacacaccagaaaaagacgtaaat 46878251  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 46518694 - 46518645
Alignment:
Q  71 catcagcaattaattgccgatgaagttatattgataaattactggtgttt 120  Q
    |||||||| |||| |||||||| | |||||||| ||||||||||||||||    
T  46518694 catcagcagttaaatgccgatggaattatattggtaaattactggtgttt 46518645  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 42456928 - 42456975
Alignment:
Q  81 taattgccgatgaagttatattgataaattactggtgtttcctagcat 128  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  42456928 taattaccgatgaggttatattggtaaattactggtgtttcctagcat 42456975  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 5920867 - 5920915
Alignment:
Q  80 ttaattgccgatgaagttatattgataaattactggtgtttcctagcat 128  Q
    |||| |||||||||  |||||||| |||| |||||||||||||||||||    
T  5920867 ttaactgccgatgagattatattggtaaagtactggtgtttcctagcat 5920915  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 51381007 - 51380944
Alignment:
Q  87 ccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 150  Q
    ||||||| ||||||||||||||||||| |||||||||||||| || | || ||||| |||||||    
T  51381007 ccgatgatgttatattgataaattactagtgtttcctagcattgagtgaagtgtgaacaacatt 51380944  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 39028253 - 39028200
Alignment:
Q  36 aagactgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccg 89  Q
    |||||||||||||||||||||||||||||||||  |||| ||| |||| |||||    
T  39028253 aagactgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccg 39028200  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 27844700 - 27844740
Alignment:
Q  80 ttaattgccgatgaagttatattgataaattactggtgttt 120  Q
    |||| |||||||||| ||||||||||||||||||| |||||    
T  27844700 ttaactgccgatgaaattatattgataaattactgatgttt 27844740  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 29699536 - 29699626
Alignment:
Q  40 ctgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattg------ccgatgaagttatattgataaattactggtgtttccta 124  Q
    |||||||||||||||||||||||||||||  |||| ||| |||| ||      ||||||| ||||||||| ||||||||| ||||||||||    
T  29699536 ctgaaacacaccagaaaaagacgtaaatgtccatcggcagttaactgccactaccgatgaggttatattggtaaattactagtgtttccta 29699626  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 12037352 - 12037314
Alignment:
Q  90 atgaagttatattgataaattactggtgtttcctagcat 128  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12037352 atgaggttatattgataaattactggtgtttcctagcat 12037314  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 27249849 - 27249915
Alignment:
Q  89 gatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcc 155  Q
    ||||||||||||||||||||||||| |||||||||| ||| || | || ||||| ||||||| ||||    
T  27249849 gatgaagttatattgataaattactagtgtttcctaacattgagtgaagtgtgaacaacattcttcc 27249915  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 29923933 - 29923982
Alignment:
Q  71 catcagcaattaattgccgatgaagttatattgataaattactggtgttt 120  Q
    ||||||||||||| ||||||||| ||||||||  ||||||||||||||||    
T  29923933 catcagcaattaactgccgatgaggttatattagtaaattactggtgttt 29923982  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 42013413 - 42013385
Alignment:
Q  100 attgataaattactggtgtttcctagcat 128  Q
    |||||||||||||||||||||||||||||    
T  42013413 attgataaattactggtgtttcctagcat 42013385  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 21512073 - 21512003
Alignment:
Q  80 ttaattgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 150  Q
    |||| ||||||| ||||||||||||||||||| | |||||||||||||| || | || ||||| |||||||    
T  21512073 ttaactgccgataaagttatattgataaattagtagtgtttcctagcattgagtgaagtgtgaacaacatt 21512003  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 43149000 - 43148960
Alignment:
Q  28 attcaactaagactgaaacacaccagaaaaagacgtaaatg 68  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  43149000 attcaactaaggctgaaacacaccagaaaaaaacgtaaatg 43148960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 21512143 - 21512101
Alignment:
Q  41 tgaaacacaccagaaaaagacgtaaatgcacatcagcaattaa 83  Q
    ||||||||||||||||||||||||||||  |||||||| ||||    
T  21512143 tgaaacacaccagaaaaagacgtaaatgtccatcagcagttaa 21512101  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 37283757 - 37283811
Alignment:
Q  96 ttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 150  Q
    |||||||||||||||||| |||||||||||||| || | || ||||| |||||||    
T  37283757 ttatattgataaattactcgtgtttcctagcattgagtgaagtgtgaacaacatt 37283811  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 9379255 - 9379211
Alignment:
Q  87 ccgatgaagttatattgataaattactggtgtttcctagcatcga 131  Q
    ||||||||||||||||||||||||||||  |||| | ||||||||    
T  9379255 ccgatgaagttatattgataaattactgtagttttcaagcatcga 9379211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 10315851 - 10315791
Alignment:
Q  29 ttcaactaagactgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccg 89  Q
    |||||||||| |||||  | | ||||||||||||||||||| |||| ||| ||||||||||    
T  10315851 ttcaactaaggctgaattatatcagaaaaagacgtaaatgcccatcggcagttaattgccg 10315791  T

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