View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_low_11 (Length: 411)
Name: NF15062_low_11
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 8926886 - 8926500
Alignment:
| Q |
18 |
aaaacactttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgccagtttctccaatttctctgcaaattcctt |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926886 |
aaaacactttcttcaagtaccctttctcaagtccaagattctcacacaataagtcaagaagttcctctgccagtttctccaatttctctgcaaattcctt |
8926787 |
T |
|
| Q |
118 |
cattgtcttcctgaaattcacaaagatataaatatatgagtttaagtatatgattttatatgtgtgactttagaaataattataatagtaannnnnnnna |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8926786 |
cattgtcttcctgaaattcacaaagatataaatatatgagtttaagtatatgattttatatgtgtgactttagaaataattataatagtaatttttttta |
8926687 |
T |
|
| Q |
218 |
cgctgatggtgtatatgaattaaatactaaatatatattttaacaaaacattaaaatatgtgacctgtaatcttcatcaagatctgggatctctgaaata |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926686 |
cgctgacagtgtatatgaattaaatactaaatatatattttaacaaaacattaaaatatgtgacctgtaatcttcatcaagatctgggatctctgaaata |
8926587 |
T |
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| Q |
318 |
ttagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttctgactgaacacactccaaacctttgctt |
404 |
Q |
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| T |
8926586 |
ttagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttctgactgaacacactccaaacctttgctt |
8926500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 55523373 - 55523247
Alignment:
| Q |
278 |
tgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttct |
377 |
Q |
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| T |
55523373 |
tgacctgtagtcatgatcaagatcagggatctctgatatgttaaagttaggaaggtggcgcaaaaagaaagtgctttcccaatccaagtcattaatttca |
55523274 |
T |
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| Q |
378 |
gactgaacacactccaaacctttgctt |
404 |
Q |
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|||||| || |||| |||||||||||| |
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| T |
55523273 |
gactgagcaaactctaaacctttgctt |
55523247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 55523694 - 55523582
Alignment:
| Q |
23 |
actttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgccagtttctccaatttctctgcaaattccttcattg |
122 |
Q |
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||||||||||| || |||||||| || ||||||||||||||| |||||||||||| ||| ||||| ||||| | || | ||||||||||||||||| |
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| T |
55523694 |
actttcttcaaataacctttctctagcccaagattctcacacagaaagtcaagaagtagctcagccaggttctcaagttccactgcaaattccttcatta |
55523595 |
T |
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| Q |
123 |
tcttcctgaaatt |
135 |
Q |
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||||||| ||||| |
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| T |
55523594 |
tcttcctaaaatt |
55523582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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