View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15062_low_13 (Length: 400)

Name: NF15062_low_13
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15062_low_13
NF15062_low_13
[»] chr7 (2 HSPs)
chr7 (70-384)||(16701405-16701707)
chr7 (70-384)||(17675641-17675943)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 70 - 384
Target Start/End: Original strand, 16701405 - 16701707
Alignment:
Q  70 agagatatgcatttgtatatgttgatgggttgaatcattttagacatgtcacaatttggagttttgatctcaaacttctaccaagtcagattaggatcca 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  16701405 agagatatgcatttgcatatgttgatgggttgaatcattttagacatgtcacaatttggagttttgatctcaaacttctaccaagtcaga---------- 16701494  T
Q  170 aaagttattagattcaaaatttggagttcatgaacactttcgttaaaaaggaacattcctttttaaacccccactttgcccaaatggtaatgcatttgtc 269  Q
      ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16701495 --agttattagattcaaaattaggagttcatgaacactttcgttaaaaaggaacattcctttttaaacccccactttgcccaaatggtaatgcatttgtc 16701592  T
Q  270 tcatttccatcttttttatatcatgggctgagtcatgttgtgaattacagaaaatgggatttaaagttcgctatcagcacccccattttgataatatctt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16701593 tcatttccatcttttttatatcatgggctgagtcatgttgtgaattacagaaaatgggatttaaagttcactatcagcacccccattttgataatatctt 16701692  T
Q  370 accctttaccctgaa 384  Q
    |||| ||||||||||    
T  16701693 accccttaccctgaa 16701707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 70 - 384
Target Start/End: Original strand, 17675641 - 17675943
Alignment:
Q  70 agagatatgcatttgtatatgttgatgggttgaatcattttagacatgtcacaatttggagttttgatctcaaacttctaccaagtcagattaggatcca 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  17675641 agagatatgcatttgcatatgttgatgggttgaatcattttagacatgtcacaatttggagttttgatctcaaacttctaccaagtcaga---------- 17675730  T
Q  170 aaagttattagattcaaaatttggagttcatgaacactttcgttaaaaaggaacattcctttttaaacccccactttgcccaaatggtaatgcatttgtc 269  Q
      ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17675731 --agttattagattcaaaattaggagttcatgaacactttcgttaaaaaggaacattcctttttaaacccccactttgcccaaatggtaatgcatttgtc 17675828  T
Q  270 tcatttccatcttttttatatcatgggctgagtcatgttgtgaattacagaaaatgggatttaaagttcgctatcagcacccccattttgataatatctt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17675829 tcatttccatcttttttatatcatgggctgagtcatgttgtgaattacagaaaatgggatttaaagttcactatcagcacccccattttgataatatctt 17675928  T
Q  370 accctttaccctgaa 384  Q
    |||| ||||||||||    
T  17675929 accccttaccctgaa 17675943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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