View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_low_17 (Length: 337)
Name: NF15062_low_17
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 167 - 335
Target Start/End: Complemental strand, 1537830 - 1537661
Alignment:
| Q |
167 |
ttctgattgcaa-cgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
265 |
Q |
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| T |
1537830 |
ttctgattgcaaacgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
1537731 |
T |
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| Q |
266 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctttt |
335 |
Q |
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| T |
1537730 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctttt |
1537661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 1537956 - 1537850
Alignment:
| Q |
1 |
tttaggtaacaccaccatatccagatgcattcgcatgatcttaacaaagaccgacgcatcattgtgttgcctctcatacgaggcttgcggcaaggattga |
100 |
Q |
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| T |
1537956 |
tttaggtaacaccaccatat------gcattcccatgatcttaacaaagac-gaagcatcattgttttgcctctcatacgaggcttgcggcaaggattga |
1537864 |
T |
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| Q |
101 |
aaggatcttgggct |
114 |
Q |
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| T |
1537863 |
aaggatcttgggct |
1537850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 46641786 - 46641851
Alignment:
| Q |
199 |
tgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
264 |
Q |
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| T |
46641786 |
tgtttctagtgctttgtctcctcagatttatatcagcctgtttttccaaagaatcaacatcacaag |
46641851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 46172995 - 46173079
Alignment:
| Q |
180 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
264 |
Q |
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| T |
46172995 |
gctctaactgtcaacggtctgtttctagtgctctgtctcctgggatttatatcaggctgttgttccaaagaaccaacatcacaag |
46173079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 46620395 - 46620350
Alignment:
| Q |
77 |
tacgaggcttgcggcaaggattgaaaggatcttgggctgtctggat |
122 |
Q |
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| T |
46620395 |
tacgagccttgcggcaaggattgaaaggatcttggtgtgtctggat |
46620350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 46639113 - 46639067
Alignment:
| Q |
77 |
tacgaggcttgcggcaaggattgaaaggatcttgggctgtctggatg |
123 |
Q |
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| T |
46639113 |
tacgagccttgcgacaaggattgaaaggatcttggtgtgtctggatg |
46639067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 46630788 - 46630704
Alignment:
| Q |
180 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
264 |
Q |
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| T |
46630788 |
gctctaactgtcaatggtctttttctattgctctgtctcctcggatttatatcaggctgttgttccaacgaaccaacatcacaag |
46630704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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