View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_low_19 (Length: 294)
Name: NF15062_low_19
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 34379818 - 34379552
Alignment:
| Q |
10 |
agaagaagcactagcagcagtttcagagggaggaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaaccac |
109 |
Q |
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| T |
34379818 |
agaagaagcactagcagcagtttcagagggaggaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaaccac |
34379719 |
T |
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| Q |
110 |
ctaaatgtaagtttgctccacacaccagcttttgcaaaagcctcttcatcttcaaaagtagaagattcaaactctttctgaagtaacctttcttctattt |
209 |
Q |
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| T |
34379718 |
ctaaatgtaagtttgctccacacaccagcttttgcaaaagcctcttcatcttcaaaagtagaagattcaaactctttctgaagtaacctttcttctattt |
34379619 |
T |
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| Q |
210 |
cactttgttcccttacacacacattaggaaatgcattgaaacacatcactaacaacataggcaaaga |
276 |
Q |
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| T |
34379618 |
cactttgttcccttacacacacattaggaaatgcattgaaacacatcactaacaacataggcaaaga |
34379552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 44419956 - 44420044
Alignment:
| Q |
45 |
cagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaaccacctaaatgtaagtttgctccacaca |
133 |
Q |
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| T |
44419956 |
cagaaggaacattgatatgttcaagcttctgaatccaacccatttcaaaaataggattcaaccacctaaatgtaagtttactccacaca |
44420044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 8815026 - 8814955
Alignment:
| Q |
64 |
ttcaagcttctgaatccgacccatttcaaatataggattcaaccacctaaatgtaagtttgctccacacacca |
136 |
Q |
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| T |
8815026 |
ttcaagcttctgaatccaacccatttcaaaaatag-attcaaccacctaaatgtaagtttactccacacacca |
8814955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 621301 - 621250
Alignment:
| Q |
42 |
gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaa |
93 |
Q |
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| T |
621301 |
gaacagaaggaacattgatatgttcaaacttctcaatccaacccatttcaaa |
621250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 4032233 - 4032303
Alignment:
| Q |
42 |
gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaaccaccta |
112 |
Q |
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| T |
4032233 |
gaacagaaggagcattgatatgttcaagcttctgaatccaacccgtttcaaaaataggattcaaccaccta |
4032303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 9082516 - 9082579
Alignment:
| Q |
42 |
gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaa |
105 |
Q |
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| T |
9082516 |
gaacagaaggaacattcatatgttcaagattctgaatccaacccatttcaaaaataggattcaa |
9082579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 1576855 - 1576906
Alignment:
| Q |
42 |
gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaa |
93 |
Q |
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|||||||||||||||| | |||||||| ||||| ||||| |||||||||||| |
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| T |
1576855 |
gaacagaaggaacattgatatgttcaaacttctcaatccaacccatttcaaa |
1576906 |
T |
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