View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15062_low_22 (Length: 287)

Name: NF15062_low_22
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15062_low_22
NF15062_low_22
[»] chr6 (1 HSPs)
chr6 (1-287)||(2561524-2561810)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 2561810 - 2561524
Alignment:
Q  1 aagtctctcctccaccgctctatttgtacccaaactcttgaaccaagtgtaaggattcccatcaaggttaatatcaatcaaacctgcattatgaatagct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  2561810 aagtctctcctccaccgctctatctgtacccaaactcttgaaccaagtgtaaggatacccatcaaggttaatatcaatcaaacctgcatcatgaatagct 2561711  T
Q  101 catctttagccatttatcaaccagaatggacggactgttctccccttcttttcatgtgcatgaaggatatcgttaaaatctccaaaaatgcaccatggga 200  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2561710 cttctttagccatttatcaaccaggatggacggactgttctccccttcttttcatgtgcatgaaggatatcgttaaaatctccaaaaatgcaccatggca 2561611  T
Q  201 gagaagtactatttgctaattgataaatgaaatttcaagaatctcttctcctcctcccatcggggaagccataataacccgttaact 287  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2561610 gagaagtactatttgctaattgacgaatgaaattccaagaatctcttctcctcctcccatcggggaagccataataacccgttaact 2561524  T

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