View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15062_low_23 (Length: 287)

Name: NF15062_low_23
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15062_low_23
NF15062_low_23
[»] chr1 (3 HSPs)
chr1 (14-184)||(3222944-3223116)
chr1 (14-183)||(26542354-26542525)
chr1 (15-184)||(38010666-38010847)
[»] chr7 (5 HSPs)
chr7 (14-184)||(34144477-34144650)
chr7 (19-184)||(3270639-3270808)
chr7 (14-85)||(24977303-24977374)
chr7 (14-85)||(24977000-24977071)
chr7 (8-183)||(1774587-1774773)
[»] chr8 (3 HSPs)
chr8 (19-183)||(39643188-39643354)
chr8 (19-183)||(39643478-39643644)
chr8 (28-164)||(14101144-14101284)
[»] chr6 (2 HSPs)
chr6 (15-109)||(6889423-6889518)
chr6 (15-87)||(9664978-9665049)
[»] chr5 (1 HSPs)
chr5 (30-183)||(21045770-21045929)
[»] chr4 (4 HSPs)
chr4 (15-85)||(27065619-27065689)
chr4 (15-85)||(27086722-27086792)
chr4 (136-184)||(27065750-27065798)
chr4 (136-184)||(27086853-27086901)
[»] chr3 (1 HSPs)
chr3 (39-109)||(36323758-36323828)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 3223116 - 3222944
Alignment:
Q  14 gaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtcttaagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| | ||||||| || ||||||||||||||    
T  3223116 gaataatttagctatttagtttaagagtaaaattatattagtttgtccttcttttgagttgttgctagttgggccttaagttaggtctttagtcttaagc 3223017  T
Q  114 ccattaggattaccatccttccta--tatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaag 184  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||    
T  3223016 ccattagggttaccatccttcctatatatagtgtctttgacacactatccaaatcaatgaaatgaatcaaaag 3222944  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 26542525 - 26542354
Alignment:
Q  14 gaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtcttaagc 113  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| |||  |  |||||||| ||||||| | |||| || || ||||||||| ||||    
T  26542525 gaataatttagttatttagtttcagagtaaaattatattagtttgtccttcactttagttgttgctagttgggccttaaattaggtctttagtctcaagc 26542426  T
Q  114 ccattaggattaccatccttc--ctatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 183  Q
    | |||| | |||| ||  |||   |||||||||||||||||||||||||||||  |||||||||||||||||    
T  26542425 cgattaaggttactatgtttcttatatatagtgtctttgacacactatccaaatcaatgaaatgaatcaaaa 26542354  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 38010847 - 38010666
Alignment:
Q  15 aataatttagctatttagtttaagagtaaaattatattagtttgtctttc-tttagagttgttgttagttgga-ctttaagtttggcctttagtc-ttaa 111  Q
    ||||||||| ||||||| ||||  |||| ||||||||||||||||||||| || ||||||||| ||||||||| ||||||||| || |||||||| ||||    
T  38010847 aataatttacctatttaatttagaagtataattatattagtttgtctttcattgagagttgtttttagttggatctttaagttgggtctttagtctttaa 38010748  T
Q  112 gcccattaggattaccatcc-------ttcctat--atagtgtctttgacacactatccaaaggaatgaaatgaatcaaaag 184  Q
    || ||||||| |||  ||||       |||||||  ||||||||||||||| ||||| ||||  ||| ||||||||||||||    
T  38010747 gctcattagggttagtatcctttatcattcctatacatagtgtctttgacatactatgcaaatcaatcaaatgaatcaaaag 38010666  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 34144477 - 34144650
Alignment:
Q  14 gaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtc-ttaag 112  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||| ||||||  | ||||||||| ||||||| | ||||||| || |||||||| ||| |    
T  34144477 gaataatttagatatctagtttaagagtaagattatattagtttatctttcacttgagttgttgctagttgggccttaagttaggtctttagtctttagg 34144576  T
Q  113 cccattaggattaccatccttc--ctatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaag 184  Q
    ||||||||| |||| ||| |||   ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34144577 cccattagggttactatcattcttatatatagtgtctttgacacaccatccaaaggaatgaaatgaatcaaaag 34144650  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 3270639 - 3270808
Alignment:
Q  19 atttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtcttaagcccatt 118  Q
    |||||| ||||||| |||||| |||||||||||||||| |||||||  | ||||| ||||||||||| | ||| ||| || |||||||||||||||||||    
T  3270639 atttagatatttagcttaagattaaaattatattagttggtctttcacttgagttattgttagttgggccttatgttaggtctttagtcttaagcccatt 3270738  T
Q  119 aggattaccatccttcc--tatatagtgtctttgacacactatc--caaaggaatgaaatgaatcaaaag 184  Q
    ||| |||| ||||||||  |||||| |||||||||||||||| |   |||  ||||||||||||||||||    
T  3270739 agggttactatccttcctatatataatgtctttgacacactaacaaaaaaaaaatgaaatgaatcaaaag 3270808  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 24977374 - 24977303
Alignment:
Q  14 gaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 85  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||    
T  24977374 gaataatttagctatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttgg 24977303  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 24977000 - 24977071
Alignment:
Q  14 gaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 85  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||    
T  24977000 gaataatttagttatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttgg 24977071  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 1774773 - 1774587
Alignment:
Q  8 tgaaaagaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggac-tttaagtttggcctttagt 106  Q
    ||||| |||||||||||||||||||||||  |||| ||  || |||||||||||||| ||  ||||||| |||||||| | |||||||| ||  ||||||    
T  1774773 tgaaatgaataatttagctatttagtttataagtataagaatgttagtttgtctttcctttaagttgttattagttgggcctttaagttaggtatttagt 1774674  T
Q  107 cttaag-cccattaggattaccatcctt-------cctatata--gtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 183  Q
    ||| || ||| ||||| |||| || | |       ||||||||  |||| ||||||||||||| ||||||||| |||||||||||||    
T  1774673 ctttaggcccgttagggttactatgcattatcactcctatatatagtgtgtttgacacactattcaaaggaatcaaatgaatcaaaa 1774587  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 39643188 - 39643354
Alignment:
Q  19 atttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtcttaagcccatt 118  Q
    |||||| ||| | |||||||| ||||||||||||| ||||||||||  |  |||||||| ||||||| | ||||||| || |||||||||||||||||||    
T  39643188 atttagatatcttgtttaagactaaaattatattattttgtctttcactttagttgttgctagttgggccttaagttaggtctttagtcttaagcccatt 39643287  T
Q  119 aggattaccatccttcctata--tagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 183  Q
    ||| |||| ||||||||||||  |||||| ||||||||||||||||||  ||| |||||||||||||    
T  39643288 agggttactatccttcctatatttagtgtttttgacacactatccaaataaatcaaatgaatcaaaa 39643354  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 39643644 - 39643478
Alignment:
Q  19 atttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtcttaagcccatt 118  Q
    |||||| ||| |||||||| ||||||||||||| ||||| ||||||  |  |||||||| ||||||| | |||| || || ||||||||||||| | |||    
T  39643644 atttagatatctagtttaaaagtaaaattatatcagtttatctttcacttaagttgttgctagttgggccttaaattaggtctttagtcttaagtctatt 39643545  T
Q  119 aggattaccatccttcc--tatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 183  Q
    | | |||| ||| ||||  |||||||||||||||||||||||||||||  ||| |||||||||||||    
T  39643544 aaggttactatctttcctatatatagtgtctttgacacactatccaaataaattaaatgaatcaaaa 39643478  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 14101144 - 14101284
Alignment:
Q  28 tttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagtt-ggactttaagtttggcctttagtc-ttaagcccattaggatta 125  Q
    |||||||||| |||| |||||||||||||||||||||  | |||||||| |||||| || |||||| || ||  ||||||| ||| || ||||||| |||    
T  14101144 tttagtttaaaagtataattatattagtttgtctttcaattgagttgtttttagttgggcctttaaattaggtttttagtctttaggctcattagggtta 14101243  T
Q  126 ccatccttcc--tatatagtgtctttgacacactatccaaa 164  Q
    | |||||| |  |||||||||||||||||||||||||||||    
T  14101244 ctatcctttctatatatagtgtctttgacacactatccaaa 14101284  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 6889423 - 6889518
Alignment:
Q  15 aataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgga-ctttaagtttggcctttagtctt 109  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||| || ||||||||||    
T  6889423 aataatttagctatttagtttataagtaaaattatgttagtttgtctttcctttgagttgttgttagttggacctttaagttgggtctttagtctt 6889518  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 9665049 - 9664978
Alignment:
Q  15 aataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggac 87  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  9665049 aataatttagctatttaatttagaagtaaaattatattagtttgtctttcttt-gatttgtttttagttggac 9664978  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 21045770 - 21045929
Alignment:
Q  30 tagtttaagagtaaaattata---ttagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtcttaag-cccattaggatta 125  Q
    |||||||||||||||||||||   ||||||||||||||  | ||||||||| | ||||||| ||||||| || || ||||||| || ||||||||| |||    
T  21045770 tagtttaagagtaaaattatactattagtttgtctttcgcttgagttgttgctcgttggaccttaagttaggtctgtagtctttaggcccattagggtta 21045869  T
Q  126 ccatccttcctatata--gtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 183  Q
    | ||| ||||||||||  |||| ||||||||||||||||||  ||| |||||||||||||    
T  21045870 cgatcattcctatatatagtgtttttgacacactatccaaatcaataaaatgaatcaaaa 21045929  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 27065619 - 27065689
Alignment:
Q  15 aataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 85  Q
    |||||||||| |||||| ||||  ||||||||||||||||||| |||||  || ||||||||| |||||||    
T  27065619 aataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgg 27065689  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 27086722 - 27086792
Alignment:
Q  15 aataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 85  Q
    |||||||||| |||||| ||||  ||||||||||||||||||| |||||  || ||||||||| |||||||    
T  27086722 aataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgg 27086792  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 27065750 - 27065798
Alignment:
Q  136 tatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaag 184  Q
    |||||||||||||||||||||||| ||||  ||| |||||||| |||||    
T  27065750 tatatagtgtctttgacacactatgcaaatcaataaaatgaataaaaag 27065798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 27086853 - 27086901
Alignment:
Q  136 tatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaag 184  Q
    |||||||||||||||||||||||| ||||  ||| |||||||| |||||    
T  27086853 tatatagtgtctttgacacactatgcaaatcaataaaatgaataaaaag 27086901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 36323828 - 36323758
Alignment:
Q  39 agtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtctt 109  Q
    ||||||||||||||| |||||||||| || ||||||||| ||||||  | || |||| || ||||||||||    
T  36323828 agtaaaattatattaatttgtctttcctttgagttgttgctagttgagccttgagttaggtctttagtctt 36323758  T

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