View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_low_24 (Length: 270)
Name: NF15062_low_24
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 2817088 - 2816843
Alignment:
| Q |
25 |
ttatacttcagaatttacaatacaacttgaaatttattatacaatcttcctgaacgagaaaaattaggtatacactctcaattatattatatggtacatc |
124 |
Q |
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| T |
2817088 |
ttatacttcagaatttacaatacaacttgaaatttattatacaatcttcctgaacgagaaaaattatgtatacactctcaattatattatatggtacatc |
2816989 |
T |
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| Q |
125 |
taagaacatgaacgtnnnnnnnnnnnnnnnnttatgctatcactatttgaaaattgctcaataggctccttgaattgcttacagacccctcaaacagtca |
224 |
Q |
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| T |
2816988 |
taagaacatgaacgtaaaaaaaataaaaaaattatgctatcactattagaaaattgctcaataggctccttgaattgcttacagacccctcaaacagtca |
2816889 |
T |
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| Q |
225 |
aatatacccttcatggttcgtaactctgtaactctttagaagttaa |
270 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
2816888 |
aatatacccttcatggttcgtaactctggaactgtttagaagttaa |
2816843 |
T |
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