View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15062_low_26 (Length: 252)

Name: NF15062_low_26
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15062_low_26
NF15062_low_26
[»] chr5 (2 HSPs)
chr5 (96-228)||(37300295-37300426)
chr5 (120-232)||(36992669-36992780)
[»] chr1 (4 HSPs)
chr1 (96-232)||(22911020-22911156)
chr1 (120-232)||(13787844-13787955)
chr1 (120-232)||(25806187-25806298)
chr1 (96-170)||(39625121-39625197)
[»] chr2 (4 HSPs)
chr2 (96-232)||(29456992-29457128)
chr2 (96-232)||(43565783-43565919)
chr2 (120-232)||(7572507-7572618)
chr2 (120-232)||(16667102-16667213)
[»] chr8 (5 HSPs)
chr8 (96-229)||(917330-917463)
chr8 (96-232)||(4139912-4140058)
chr8 (120-232)||(28844536-28844647)
chr8 (96-232)||(10187997-10188143)
chr8 (181-231)||(5368894-5368942)
[»] chr4 (6 HSPs)
chr4 (108-232)||(53829049-53829172)
chr4 (96-232)||(21804519-21804665)
chr4 (96-193)||(34736202-34736298)
chr4 (120-232)||(2503417-2503528)
chr4 (96-232)||(21631133-21631279)
chr4 (120-232)||(46093926-46094037)
[»] chr3 (3 HSPs)
chr3 (114-231)||(48267940-48268056)
chr3 (108-232)||(35872031-35872154)
chr3 (120-232)||(52351341-52351452)
[»] chr7 (4 HSPs)
chr7 (120-232)||(5766903-5767014)
chr7 (120-232)||(25417991-25418102)
chr7 (108-228)||(47232166-47232286)
chr7 (120-232)||(39065520-39065631)
[»] chr6 (2 HSPs)
chr6 (120-232)||(13431869-13431980)
chr6 (96-171)||(18884231-18884307)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 37300426 - 37300295
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattata 195  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||    
T  37300426 agtgcagtgttggattagaggaggatgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgatgtctattttaatatattata 37300328  T
Q  196 agttaggagaaaagaatatgtgatgattaggaa 228  Q
    ||||| | ||||||||||||||| |||||||||    
T  37300327 agttatgggaaaagaatatgtgaagattaggaa 37300295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 36992669 - 36992780
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggag-tctattttaatatattataagttaggagaaaagaatatgtga 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||| | ||||||||| |||||    
T  36992669 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataatttc--gagctctattttaatatattataagttatgggaaaagaatgtgtga 36992766  T
Q  219 tgattaggaaccat 232  Q
     |||||| ||||||    
T  36992767 agattagaaaccat 36992780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 22911156 - 22911020
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattata 195  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||    
T  22911156 agtgcagtgttggattagtggaggatgcgaggtaattatgtagcgtataattgatgagttgtaaacaaataatttcggtggtctattttaatatattata 22911057  T
Q  196 agttaggagaaaagaatatgtgatgattaggaaccat 232  Q
    ||||| | ||||||||||| ||| |||||||||||||    
T  22911056 agttatgggaaaagaatatatgaagattaggaaccat 22911020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 13787844 - 13787955
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  13787844 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 13787942  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  13787943 gattaggaaccat 13787955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 25806298 - 25806187
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  25806298 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 25806200  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  25806199 gattaggaaccat 25806187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 39625121 - 39625197
Alignment:
Q  96 agtgcagtgttggattaaaggaggat--gtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattt 170  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39625121 agtgccgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaacaaatgattt 39625197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 29456992 - 29457128
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattata 195  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  29456992 agtgtagtgttggattaaaagaggatgtgagataattatgtagcgtataattgatgagttgtaaacaaataatttcgaaggtctattttaatatattata 29457091  T
Q  196 agttaggagaaaagaatatgtgatgattaggaaccat 232  Q
     |||| | |||||||||||||||  ||||||||||||    
T  29457092 ggttatgggaaaagaatatgtgaaaattaggaaccat 29457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 43565783 - 43565919
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattata 195  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||  |  ||||||||||||||||||||    
T  43565783 agtgtagtgttggattagaggaggatgtgaggtaattatgtagcgtataattgatgagttgttagcaaataatttcggaggtctattttaatatattata 43565882  T
Q  196 agttaggagaaaagaatatgtgatgattaggaaccat 232  Q
     |||| | |||||||||||||||  ||||||||||||    
T  43565883 ggttatgggaaaagaatatgtgaaaattaggaaccat 43565919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 7572618 - 7572507
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  7572618 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 7572520  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  7572519 gattaggaaccat 7572507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 16667213 - 16667102
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  16667213 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 16667115  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  16667114 gattaggaaccat 16667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 917463 - 917330
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattata 195  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||  |  ||||||||||||||||||||    
T  917463 agtgcagtattggattagaggatgatgtgaggtaattatgtagcgtatagttgatgagttgtaaacaaataacttcggaggtctattttaatatattata 917364  T
Q  196 agttaggagaaaagaatatgtgatgattaggaac 229  Q
     |||| | |||||||||||||||  |||||||||    
T  917363 ggttatgggaaaagaatatgtgaaaattaggaac 917330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 4139912 - 4140058
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaa----------ttatgtagcgtataattgatgagttgtaaacaaataattttaggagtctatttta 185  Q
    ||||||||||||||||| |||||||||||||||||          |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  4139912 agtgcagtgttggattagaggaggatgtgaggtaattatgtgtaattatgtagcgtataattgatgagttgtaaacaaataatttcaggggtctatttta 4140011  T
Q  186 atatattataagttaggagaaaagaatatgtgatgattaggaaccat 232  Q
    ||||||||||||||| |  |||||| |||||||  ||||||||||||    
T  4140012 atatattataagttatggaaaaagagtatgtgaatattaggaaccat 4140058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 28844536 - 28844647
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | ||||||||| |||||     
T  28844536 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatgggaaaagaatgtgtgaa 28844634  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  28844635 gattaggaaccat 28844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 10187997 - 10188143
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgt----------agcgtataattgatgagttgtaaacaaataattttaggagtctatttta 185  Q
    ||||||||||||||||| |||||||||||||||||||||||          |||||||||||||||||||||||||||||||||| | | ||||||||||    
T  10187997 agtgcagtgttggattagaggaggatgtgaggtaattatgtgtaattatttagcgtataattgatgagttgtaaacaaataatttcatgggtctatttta 10188096  T
Q  186 atatattataagttaggagaaaagaatatgtgatgattaggaaccat 232  Q
    ||||||||||||||| |  |||||| |||||||  ||||||| ||||    
T  10188097 atatattataagttatggaaaaagagtatgtgaatattaggagccat 10188143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 5368894 - 5368942
Alignment:
Q  181 ttttaatatattataagttaggagaaaagaatatgtgatgattaggaacca 231  Q
    |||||||||||||||||||| |||||||||  |||||| ||||||||||||    
T  5368894 ttttaatatattataagttatgagaaaaga--atgtgaagattaggaacca 5368942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 53829172 - 53829049
Alignment:
Q  108 gattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaa 207  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||| |  ||||||||||||||||||||||||| | ||||    
T  53829172 gattagaggaggatgtgaggtaatcatctagcgtataattgatgagttgtacacaaataa-tttcgaggtctattttaatatattataagttatgggaaa 53829074  T
Q  208 agaatatgtgatgattaggaaccat 232  Q
    ||||||||||| |||||||||||||    
T  53829073 agaatatgtgaagattaggaaccat 53829049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 21804519 - 21804665
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgt----------agcgtataattgatgagttgtaaacaaataattttaggagtctatttta 185  Q
    |||||| |||||||||| |||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21804519 agtgcattgttggattagaggaggatgtgaggtaattatgtgtaattatatagcgtataattgatgagttgtaaacaaataattttaggggtctatttta 21804618  T
Q  186 atatattataagttaggagaaaagaatatgtgatgattaggaaccat 232  Q
    ||||||||||||||| |  |||||| |||||||  ||||||||||||    
T  21804619 atatattataagttatggaaaaagagtatgtgaatattaggaaccat 21804665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 34736298 - 34736202
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatatta 193  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||    
T  34736298 agtgcagtgttggattagaggaggatgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatatta 34736202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 2503528 - 2503417
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  2503528 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 2503430  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  2503429 gattaggaaccat 2503417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 21631279 - 21631133
Alignment:
Q  96 agtgcagtgttggattaaaggaggatgtgaggtaattatgt----------agcgtataattgatgagttgtaaacaaataattttaggagtctatttta 185  Q
    ||||||||||||||||| ||||||||||||||||| |||||          |||||||||||||||||||||||||||||||||| | | ||||||||||    
T  21631279 agtgcagtgttggattagaggaggatgtgaggtaactatgtgtaattatatagcgtataattgatgagttgtaaacaaataatttcatgggtctatttta 21631180  T
Q  186 atatattataagttaggagaaaagaatatgtgatgattaggaaccat 232  Q
    ||||||||||||||| |  |||||| |||||||  ||||||||||||    
T  21631179 atatattataagttatggaaaaagagtatgtgaatattaggaaccat 21631133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 46093926 - 46094037
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggag-tctattttaatatattataagttaggagaaaagaatatgtga 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||| | ||||||||| |||||    
T  46093926 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataatttc--gagctctattttaatatattataagttatgggaaaagaatgtgtga 46094023  T
Q  219 tgattaggaaccat 232  Q
     |||||| ||||||    
T  46094024 agattagaaaccat 46094037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 48267940 - 48268056
Alignment:
Q  114 aggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaata 213  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||| | ||||| |||     
T  48267940 aggaggatgcgaggtaatcatgtagcgtataattgatgagttgtaaacaaataatttt-gaggtctattttaatatattataagttatgggaaaaaaatg 48268038  T
Q  214 tgtgatgattaggaacca 231  Q
    ||||| ||||||||||||    
T  48268039 tgtgaagattaggaacca 48268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 35872031 - 35872154
Alignment:
Q  108 gattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaa 207  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | ||||    
T  35872031 gattagaggaggatgtgaggtaatcatgtagtgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatgggaaa 35872129  T
Q  208 agaatatgtgatgattaggaaccat 232  Q
    ||||| ||||| ||||| |||||||    
T  35872130 agaatttgtgaagattatgaaccat 35872154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 52351341 - 52351452
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  52351341 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 52351439  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  52351440 gattaggaaccat 52351452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 5767014 - 5766903
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | ||||||||| |||||     
T  5767014 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatgggaaaagaatgtgtgaa 5766916  T
Q  220 gattaggaaccat 232  Q
    |||||| ||||||    
T  5766915 gattagaaaccat 5766903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 25418102 - 25417991
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  25418102 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 25418004  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  25418003 gattaggaaccat 25417991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 47232286 - 47232166
Alignment:
Q  108 gattaaaggaggatgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattat-aagttaggagaa 206  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |  ||||||||||||||||||| || ||| | |||    
T  47232286 gattagaggaggatgtgaggtaatcatgtagcgtataattgatgagttgtaaagaaataa-tttcgaggtctattttaatatattataaaattatgggaa 47232188  T
Q  207 aagaatatgtgatgattaggaa 228  Q
    |||||||||||| |||||||||    
T  47232187 aagaatatgtgaagattaggaa 47232166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 39065631 - 39065520
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| ||| |  ||||||||||||||||||||||||| | ||||||||| |||||     
T  39065631 atgtgaggtaatcatgtagtgtataattgatgaggtgtaaacaaataa-tttcgaggtctattttaatatattataagttatgggaaaagaatgtgtgaa 39065533  T
Q  220 gattaggaaccat 232  Q
    ||||| |||||||    
T  39065532 gattaagaaccat 39065520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 13431980 - 13431869
Alignment:
Q  120 atgtgaggtaattatgtagcgtataattgatgagttgtaaacaaataattttaggagtctattttaatatattataagttaggagaaaagaatatgtgat 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| | | ||||||| |||||     
T  13431980 atgtgaggtaatcatgtagcgtataattgatgagttgtaaacaaataa-tttcgaggtctattttaatatattataagttatggggaaagaatgtgtgaa 13431882  T
Q  220 gattaggaaccat 232  Q
    |||||||||||||    
T  13431881 gattaggaaccat 13431869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 18884231 - 18884307
Alignment:
Q  96 agtgcagtgttggattaaaggaggat--gtgaggtaattatgtagcgtataattgatgagttgtaaacaaataatttt 171  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  18884231 agtgccgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagtt-taaacaaatgatttt 18884307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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