View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_low_27 (Length: 250)
Name: NF15062_low_27
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 40566560 - 40566775
Alignment:
| Q |
18 |
gttgcgagatttcaataccccaaggtcgtgtgttgagagaagtggcctatacttctgcaggtatattcaacaatcactcagacgtacatgatttcaatcc |
117 |
Q |
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| T |
40566560 |
gttgcgagatttcaataccccaaggtcgtgtgttgagagaagtggcctatacttctgcaggtatattcaacaatcactcagacgtacatgatttcaatcc |
40566659 |
T |
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| Q |
118 |
ctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactgg |
217 |
Q |
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| T |
40566660 |
ctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactgg |
40566759 |
T |
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| Q |
218 |
gcagtagggaaccaaa |
233 |
Q |
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| T |
40566760 |
gcagtagggaaccaaa |
40566775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 40600679 - 40600790
Alignment:
| Q |
119 |
tgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactggg |
218 |
Q |
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| T |
40600679 |
tgtggttatgcttttgtggttgaatatggagcctacagcttcaattccacagacctc---aagttgaataacaaggagtttcctgtgttgttggactggg |
40600775 |
T |
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| Q |
219 |
cagtagggaaccaaa |
233 |
Q |
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| T |
40600776 |
cagtagggaaccaaa |
40600790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 40589606 - 40589748
Alignment:
| Q |
91 |
tcactcagacgtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaag |
190 |
Q |
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| T |
40589606 |
tcactcagcagtatatgacttcaatccgtgtggttatgtttttattgttgaaaatggagactacattttcgcaaccacagacctccccaagctaaagaag |
40589705 |
T |
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| Q |
191 |
aaggagtttcctgtgttgttcgactgggcagtagggaaccaaa |
233 |
Q |
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| T |
40589706 |
aagaactttcctgtgttgttggactgggcagtaggaaaccaaa |
40589748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 40596035 - 40596158
Alignment:
| Q |
110 |
ttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgt |
209 |
Q |
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| T |
40596035 |
ttcaatccatgtggttatacgtttttggtggaaaatggagcctaccgctttgcaatcacagacctccaaaagctaaagaagaggaactttcctgtgttgt |
40596134 |
T |
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| Q |
210 |
tcgactgggcagtagggaaccaaa |
233 |
Q |
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| T |
40596135 |
tggactgggcagtagggaaccaaa |
40596158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 40571329 - 40571471
Alignment:
| Q |
91 |
tcactcagacgtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaag |
190 |
Q |
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| T |
40571329 |
tcactcaaaagtacatgacttcaatccatgtggctatgcttttttgattgaaaatggatcctacagcttaacacgatcagacctcctcaagttgaagaat |
40571428 |
T |
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| Q |
191 |
aaggagtttcctgtgttgttcgactgggcagtagggaaccaaa |
233 |
Q |
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| T |
40571429 |
aaggagtttcctgtgttgttgaactggacagtaggaaaccaaa |
40571471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 40577765 - 40577878
Alignment:
| Q |
101 |
gtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatcca-cagacctccttgagttaaagaagaaggagttt |
199 |
Q |
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| T |
40577765 |
gtacatgacttcaatccatgtggttattcttttttggttgcaaatggaaactacagctt-gacacgatcagacctcat---gttgatgaagaaggagttt |
40577860 |
T |
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| Q |
200 |
cctgtgttgttcgactgg |
217 |
Q |
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| T |
40577861 |
cctgtgttgttggactgg |
40577878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 40595940 - 40595996
Alignment:
| Q |
18 |
gttgcgagatttcaataccccaaggtcgtgtgttgagagaagtggcctatacttctg |
74 |
Q |
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| T |
40595940 |
gttgtgagatttcaatacccaaaggtcgtgtgtttacggaagttgcctatatttctg |
40595996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 2017050 - 2016899
Alignment:
| Q |
82 |
attcaacaatcactcagacgtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgag |
181 |
Q |
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| T |
2017050 |
attcaacaatcactcagcagtacatgacttcaatccttgtggttatgctttttttgttgaaaatggagcctacactttcgaatccacggacctcctcaag |
2016951 |
T |
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| Q |
182 |
ttaaagaagaaggagtttcctgtgttgttcgactgggcagtagggaaccaaa |
233 |
Q |
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| T |
2016950 |
ttggagaagaaggaatttcctgtgttgttggactgggcagtagggaaccaaa |
2016899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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