View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_low_3 (Length: 533)
Name: NF15062_low_3
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 186 - 518
Target Start/End: Complemental strand, 47333817 - 47333484
Alignment:
| Q |
186 |
ttctaatctcaattacagaagaatacaaatttgtgactaaattaacnnnnnnnattacattataattataataaaaatcgtaagtacaccaatatcatga |
285 |
Q |
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| T |
47333817 |
ttctaatctcaattacagaagaatacaaatttgtgactaaattaacttttt---ttttattacact-ataataaaaatagtaagtacaccaatatcatga |
47333722 |
T |
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| Q |
286 |
ttgtcgtgattgcagtataaaagaaaaatatga--ttcattgaattgaatatcc---ataaacaaaacaggataattaaaattgatcatgaattcagcaa |
380 |
Q |
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| T |
47333721 |
ttgtcgtgattgcagtataaaagacaaatatgaaattcattgaattgaatatcccatataaacaaaacaggataattaaaattgatcatgaattcagcaa |
47333622 |
T |
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| Q |
381 |
ccccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaatag |
480 |
Q |
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| T |
47333621 |
ccccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaatag |
47333522 |
T |
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| Q |
481 |
aattctgagtttcaggatgataaatctgaaaacaatgt |
518 |
Q |
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| T |
47333521 |
aactctgagtttcaggatgataaatctgaaaacaatgt |
47333484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 47334051 - 47333908
Alignment:
| Q |
15 |
tgtgacgaatgaaaaaattgatgtgatnnnnnnntgatgaaaagttggctgctttcactgcagaccaacctcttgtctggtgggacgtttcattttannn |
114 |
Q |
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| T |
47334051 |
tgtgacgaatgaaaaaattgatgtgataaaaaaatgatgaaaagttggctgctttcactgcagaccaacctcttgtctggtgggacgtttcattttattt |
47333952 |
T |
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| Q |
115 |
nnnncgcaattcttaacactattttataggaatcccttttaagaat |
160 |
Q |
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| T |
47333951 |
ttgtcacaattc-taacatta-tttataggaatcccttttaagaat |
47333908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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