View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15062_low_31 (Length: 238)
Name: NF15062_low_31
Description: NF15062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15062_low_31 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 25168326 - 25168507
Alignment:
| Q |
17 |
agaagatatgcatgtcggagcttcttggtgtaagaacgcttgatcaactccgtcccttgaggcaacaagagactctaaggtttcttagacttttgcagaa |
116 |
Q |
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| T |
25168326 |
agaagatatgcatgtcagagcttcttggtgtaataacgcttgatcaactccgtcccttgaggcaacaagagactctaaggtttcttagacttttgcagaa |
25168425 |
T |
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| Q |
117 |
gaaaggggaaaccggtgaagccgttgaagttgggggcgagctattgactctcaccaatagcattataacaatgatgacaatg |
198 |
Q |
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| T |
25168426 |
gaaaggggaaaccggtgaagccattgaagttgggggcgagctattgactctcaccaatagcattataacaataatgacaatg |
25168507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 24939707 - 24939888
Alignment:
| Q |
17 |
agaagatatgcatgtcggagcttcttggtgtaagaacgcttgatcaactccgtcccttgaggcaacaagagactctaaggtttcttagacttttgcagaa |
116 |
Q |
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|||||||||||||||| ||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | || |
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| T |
24939707 |
agaagatatgcatgtcagagcttcttggtggaagaaccctcgatcaacttcgtcccttgaggcaacaagagactctaagatttcttagacttttggataa |
24939806 |
T |
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| Q |
117 |
gaaaggggaaaccggtgaagccgttgaagttgggggcgagctattgactctcaccaatagcattataacaatgatgacaatg |
198 |
Q |
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| T |
24939807 |
gaaaggggaagccggtgaagccgttgatattggcggcgagctgttgactctatccaatagcattataacaaggatgacaatg |
24939888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 38809056 - 38808988
Alignment:
| Q |
22 |
atatgcatgtcggagcttcttggtgtaagaacgcttgatcaactccgtcccttgaggcaacaagagact |
90 |
Q |
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| T |
38809056 |
atatgcatgtcagagcttcttggtggaagaactcttgatcaattctgttccttgaggcagcaagagact |
38808988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 10610 - 10785
Alignment:
| Q |
19 |
aagatatgcatgtcggagcttcttggtgtaagaacgcttgatcaactccgtcccttgaggcaacaagagactctaaggtttcttagacttttgcagaaga |
118 |
Q |
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| T |
10610 |
aagatatgcatgtcagagcttcttggtggaagaactattgatcaattccgtccgttgaggcaacaagagaccgtgcggtttcttagacttctgcagaaga |
10709 |
T |
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| Q |
119 |
aaggggaaaccggtgaagccgttgaagttgggggcgagctattgactctcaccaatagcattataacaatgatgac |
194 |
Q |
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| T |
10710 |
aaggggaagccggcgaagctgttgatgtcagtggcttgctcttgaatctcacgaatagaatcataacaaggatgac |
10785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 24160 - 24290
Alignment:
| Q |
19 |
aagatatgcatgtcggagcttcttggtgtaagaacgcttgatcaactccgtcccttgaggcaacaagagactctaaggtttcttagacttttgcagaaga |
118 |
Q |
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|||||||||||||| ||||||||||||| |||||| ||||||||| | ||||| |||||||||||||||||| | ||| |||||| ||||| |||||| |
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| T |
24160 |
aagatatgcatgtccgagcttcttggtggaagaactcttgatcaatttcgtccattgaggcaacaagagactttgaggcttcttaatgttttgaagaaga |
24259 |
T |
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| Q |
119 |
aaggggaaaccggtgaagccgttgaagttgg |
149 |
Q |
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| T |
24260 |
atggggaaaccggtgaggcggttgatgttgg |
24290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 18805 - 18908
Alignment:
| Q |
73 |
ttgaggcaacaagagactctaaggtttcttagacttttgcagaagaaaggggaaaccggtgaagccgttgaagttgggggcgagctattgactctcacca |
172 |
Q |
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||||||||| |||| ||| | |||||||||||||||||||||| ||||||||| | | || || ||| | ||||| |||||||| |||| |||||| | |
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| T |
18805 |
ttgaggcaaaaagaaactatgaggtttcttagacttttgcagacaaaaggggaagctcgcgaggctgttaatgttggcggcgagctcttgaatctcacga |
18904 |
T |
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| Q |
173 |
atag |
176 |
Q |
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|||| |
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| T |
18905 |
atag |
18908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 11547 - 11389
Alignment:
| Q |
25 |
tgcatgtcggagcttcttggtgtaagaacgcttgatcaactccgtcccttgaggcaacaagagactctaaggtttcttagacttttgcagaagaaagggg |
124 |
Q |
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|||||||| |||||||||||| |||||| ||||||||| ||| ||| |||| |||||||||| | | || || | | |||||||||||||| ||| | |
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| T |
11547 |
tgcatgtcagagcttcttggtaaaagaacacttgatcaattccttccattgatgcaacaagagtcattgagattcttaaaacttttgcagaagataggag |
11448 |
T |
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| Q |
125 |
aaaccggtgaagccgttgaagttgggggcgagctattgactctcaccaatagcattata |
183 |
Q |
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| T |
11447 |
aagctggcaacgccgttgatgtcggcggcgagctcttaactctcaccaataacattata |
11389 |
T |
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