View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15063_high_6 (Length: 240)
Name: NF15063_high_6
Description: NF15063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15063_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 24199882 - 24200046
Alignment:
| Q |
1 |
gtttttgagagaaccattgaatatcatttaaaaatcaagatatttctaatttgcataaactattagcaaacaacgattgaac-nnnnnnngcaaagaatt |
99 |
Q |
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| T |
24199882 |
gtttttgagagaaccattgaatatcatttgaaaatcaagatatttctaatttgcataaactattagcaaacaacgattgaacaaaaaaaagcaaagaatt |
24199981 |
T |
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| Q |
100 |
gataaagaaaagtgaataaacagtagaaacagtgtgaattgcaatttcctctcgaatgccactta |
164 |
Q |
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| T |
24199982 |
gataaagaaaagtgaataaacagtagaagtagtgtgaattgcaatttcctctcgaatgccactta |
24200046 |
T |
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Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 47698627 - 47698820
Alignment:
| Q |
2 |
tttttgagagaaccattgaatatcatttaaaaatcaagatatttctaatttgcataaactattagcaaacaacgattgaacnnnnnnng-caaagaattg |
100 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47698627 |
tttttgagagaactattgaatatcatttgaaaattaagatatgtctcatttgcataaactattagcaaacaacgattgaacaaaaaaaaacaaagaattg |
47698726 |
T |
|
| Q |
101 |
ataaagaaaagtgaataaacagtagaaacagtgtgaattgcaatttcctctcgaatgccacttatatatagatatttccataggataacttagt |
194 |
Q |
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| T |
47698727 |
ataaagaaaagtgaataaacagtagaagcagtatgatttgcaattttctctcgaatgccacttatatatagatatttccatagggtaacttagt |
47698820 |
T |
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