View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15063_low_2 (Length: 362)
Name: NF15063_low_2
Description: NF15063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15063_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 13077293 - 13076955
Alignment:
| Q |
20 |
cgtccgatatcattttcagatgtgattcatcgcgtgcaatcacactgcacacaattcaatctcctttgaaattcttagattaccaaatgagctacctacc |
119 |
Q |
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| T |
13077293 |
cgtccgatttcatgtacagatgtgactcatcgcg-gtaatcacactgcacacaattcaatcacctttgaaattcttagattaccaaatgagctacctacc |
13077195 |
T |
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| Q |
120 |
aatttctttaagtttatggcaattcttacaattctaagtgaaatataagtatttttcatatttgcaggctggtccacgtatatgcttaggaaaggacttt |
219 |
Q |
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| T |
13077194 |
aatttctttaagtttatggcaattcttacaattctaagtgaaatataagtatttttcatatttgcaggctggtccacgtatatgcttaggaaaggacttt |
13077095 |
T |
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| Q |
220 |
gcttataggcaaatgaaaatagtgtcaatggcacttcttcgattctttaggtttaaattggaaaatgaaacaaatgatgtgacatatagaaccatgttca |
319 |
Q |
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| T |
13077094 |
gcttataggcaaatgaaaatagtgtcaatggcacttgttcgattctttaggtttaaattggaaaatgaaacaaatgatgtgacatatagaaccatgttca |
13076995 |
T |
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| Q |
320 |
ctcttcacattgaccatggccttcctccctatgctactcc |
359 |
Q |
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| T |
13076994 |
ctcttcacattgaccatggccttcctctctatgcaactcc |
13076955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 156 - 359
Target Start/End: Complemental strand, 13084162 - 13083959
Alignment:
| Q |
156 |
agtgaaatataagtatttttcatatttgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagtgtcaatggcactt |
255 |
Q |
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| T |
13084162 |
agtgaaatataagtatttttcatatttgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagtgtcaatggcactt |
13084063 |
T |
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| Q |
256 |
cttcgattctttaggtttaaattggaaaatgaaacaaatgatgtgacatatagaaccatgttcactcttcacattgaccatggccttcctccctatgcta |
355 |
Q |
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| T |
13084062 |
gttcgattctttaggtttaaattggaaaatgaaacaaatgatgtgacatatagaaccatgttcactcttcacattgaccatggccttcctctctatgcaa |
13083963 |
T |
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| Q |
356 |
ctcc |
359 |
Q |
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| T |
13083962 |
ctcc |
13083959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 13102589 - 13102529
Alignment:
| Q |
182 |
tgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagt |
242 |
Q |
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| T |
13102589 |
tgcaggctggaccacgtatgtgcttagggaaggactttgcatacagacaaatgaaaatagt |
13102529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 13113430 - 13113370
Alignment:
| Q |
182 |
tgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagt |
242 |
Q |
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| T |
13113430 |
tgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaatagt |
13113370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 18671194 - 18671254
Alignment:
| Q |
182 |
tgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagt |
242 |
Q |
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| T |
18671194 |
tgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaatagt |
18671254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 13095249 - 13095187
Alignment:
| Q |
180 |
tttgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagt |
242 |
Q |
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| T |
13095249 |
tttgtaggctggacctcgtatgtgcttagggaaggactttgcatacagacaaatgaaaatagt |
13095187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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