View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15063_low_7 (Length: 236)
Name: NF15063_low_7
Description: NF15063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15063_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 24199812 - 24199963
Alignment:
| Q |
77 |
attaatgattattattaaagatcgaggtttttgaagaacattacataaaccatcgaatatcannnnnnnnnnnnnnngagagaaccattgaatatcattt |
176 |
Q |
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| T |
24199812 |
attaatgattattattaaagatcgaggtttttgaagaacattgcataaaccattgaatatcattttttttgttttt-gagagaaccattgaatatcattt |
24199910 |
T |
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| Q |
177 |
aaaaatcaagatatttctaatttgcataaactattagcaaacaacgattgaac |
229 |
Q |
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| T |
24199911 |
gaaaatcaagatatttctaatttgcataaactattagcaaacaacgattgaac |
24199963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24198115 - 24198203
Alignment:
| Q |
1 |
atttattttaaaagatgagaagaacaaactaatttattttgagtggtgg-----------cagcgatgaagacatcaaacaacaacgat |
78 |
Q |
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| T |
24198115 |
atttatttcaaaagatgagaagaacaaactaatttattttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaacgat |
24198203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 47698632 - 47698707
Alignment:
| Q |
154 |
gagagaaccattgaatatcatttaaaaatcaagatatttctaatttgcataaactattagcaaacaacgattgaac |
229 |
Q |
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| T |
47698632 |
gagagaactattgaatatcatttgaaaattaagatatgtctcatttgcataaactattagcaaacaacgattgaac |
47698707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 47698575 - 47698620
Alignment:
| Q |
93 |
aaagatcgaggtttttgaagaacattacataaaccatcgaatatca |
138 |
Q |
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| T |
47698575 |
aaagatcgaggtttttgaaaaacattgcataaaccattgaatatca |
47698620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43449899 - 43449947
Alignment:
| Q |
1 |
atttattttaaaagatgagaagaacaaactaatttattttgagtggtgg |
49 |
Q |
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| T |
43449899 |
atttatttcaaaagatgagaagaacaaactaatttattttgagcggtgg |
43449947 |
T |
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