View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15065_low_1 (Length: 466)
Name: NF15065_low_1
Description: NF15065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15065_low_1 |
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| [»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 448
Target Start/End: Complemental strand, 6346816 - 6346388
Alignment:
| Q |
21 |
tcaacaaggttaataagttcaattctcagctcataattcactactaaaacattaacttgctatgtttctcctttttatt-ggtaactcttctactttgaa |
119 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || || |
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| T |
6346816 |
tcaacaaggtaaattagttcaattctcagctcataattcactactaaaacattaacttgctatgtttctcttttttatttggtaactcttctacattcaa |
6346717 |
T |
|
| Q |
120 |
gttattaaatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6346716 |
gttattaaatatactattgctaacattttattttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactattaagccaattttttgagc |
6346617 |
T |
|
| Q |
220 |
tattgtttgcaataatcgggtttgcaacaacaaatgcaagtatggagaaatcaccacttctgtttgctttagttttcatggttgctcttttcttcatggt |
319 |
Q |
| |
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||||||| |||||||| |||||||||||||| ||| ||||||| || ||||||||||||||| | ||||| ||||||||||||||||||| || | |||| |
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|
| T |
6346616 |
tattgttcgcaataattgggtttgcaacaacgaatacaagtatcgaaaaatcaccacttctgatggctttggttttcatggttgctctttactacttggt |
6346517 |
T |
|
| Q |
320 |
tttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttg |
419 |
Q |
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|||||||||| | |||| | | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6346516 |
tttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggttattgttttacttggaagtgttgtttcagttctagctttg |
6346417 |
T |
|
| Q |
420 |
atgatgatttctcatacaattgcttggat |
448 |
Q |
| |
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| T |
6346416 |
atgatgatttctcctacaattgcttggat |
6346388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 288 - 448
Target Start/End: Original strand, 6219562 - 6219722
Alignment:
| Q |
288 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttt |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219562 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatgatggttattgttt |
6219661 |
T |
|
| Q |
388 |
tacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
448 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
6219662 |
tacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggat |
6219722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 150 - 407
Target Start/End: Original strand, 6242588 - 6242845
Alignment:
| Q |
150 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaa |
249 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||| |
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|
| T |
6242588 |
ttttcttgaattcattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagctattgtttgcaatcgtcgggtttgcagcaa |
6242687 |
T |
|
| Q |
250 |
caaatgcaagtatggagaaatcaccacttctgtttgctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattca |
349 |
Q |
| |
|
||| |||| | | ||||| | ||| || | ||||| |||||| || ||||| || | | | |||||||||| | |||| ||| ||| |||| |
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| T |
6242688 |
tgaatacaagcaacggaaaatctctactgatgatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttca |
6242787 |
T |
|
| Q |
350 |
catcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttca |
407 |
Q |
| |
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|||||| || |||||||||| ||||||||| ||| ||||||||||||||||| ||||| |
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|
| T |
6242788 |
catcaatagtttccttccatacatgatggtaattcttttacttggaagtgttatttca |
6242845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 448
Target Start/End: Complemental strand, 6333434 - 6333271
Alignment:
| Q |
285 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
384 |
Q |
| |
|
|||||||||||||||||| |||||| || | ||| |||||||||| | ||| ||| || ||||||||||||| ||| |||| | || |||| | ||| |
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| T |
6333434 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaagagtttctttccttccaagatgatcattc |
6333335 |
T |
|
| Q |
385 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
448 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||| |
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| T |
6333334 |
ttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttggat |
6333271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 6326107 - 6326013
Alignment:
| Q |
150 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgc |
244 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
6326107 |
ttttcttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgc |
6326013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 6333599 - 6333490
Alignment:
| Q |
134 |
tattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaata |
233 |
Q |
| |
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|||| ||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
6333599 |
tattcctaacatttacttt-cttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatc |
6333501 |
T |
|
| Q |
234 |
atcgggtttgc |
244 |
Q |
| |
|
||||||||||| |
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|
| T |
6333500 |
atcgggtttgc |
6333490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 448
Target Start/End: Complemental strand, 6325957 - 6325794
Alignment:
| Q |
285 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
384 |
Q |
| |
|
|||||||||||||||||| |||||| || | ||| |||||||||| | |||| | | || |||||||||||||| ||| |||| | || |||| | ||| |
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|
| T |
6325957 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatattcacatcaagagattcattccttccaagatgatcattc |
6325858 |
T |
|
| Q |
385 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
448 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| ||| | ||||| | |||||||| ||||| |
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|
| T |
6325857 |
ttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggat |
6325794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 6219395 - 6219457
Alignment:
| Q |
127 |
aatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaag |
189 |
Q |
| |
|
||||||||||| ||||||||| | || ||||||| ||||||| ||||||||||||| ||||| |
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|
| T |
6219395 |
aatatactattcctaacatttgatatttttgaattgattcaactctttctagcttgactgaag |
6219457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 823 - 909
Alignment:
| Q |
159 |
atttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgca |
245 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||||||||| |
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|
| T |
823 |
atttattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgca |
909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 448
Target Start/End: Original strand, 992 - 1094
Alignment:
| Q |
346 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttg |
445 |
Q |
| |
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|||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||| || | || |||||| | ||||| | ||||||||||| |
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|
| T |
992 |
ttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaattgcttg |
1091 |
T |
|
| Q |
446 |
gat |
448 |
Q |
| |
|
||| |
|
|
| T |
1092 |
gat |
1094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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