View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15065_low_2 (Length: 452)
Name: NF15065_low_2
Description: NF15065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15065_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 36068192 - 36068523
Alignment:
| Q |
12 |
tattccatatgtataatgtaaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttgatcaactatt |
111 |
Q |
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| T |
36068192 |
tatttcatatgtataatgtaaatattgccgtagattttctcatcaactaatattaaattggtttgttcaacattttgaccatttcatttgatcaactatt |
36068291 |
T |
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| Q |
112 |
gttacattttctcattagaacaaaattttcataaaactacccatatttgcagtaataaataaggaactctagcattaataataaattacataccaaagca |
211 |
Q |
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| T |
36068292 |
gttacattttctcattagaacaaaattttcataaaattacccatatttgcagtaataaataaggaaatctagcattaataataaattacataccaaagca |
36068391 |
T |
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| Q |
212 |
aatagggcactcaatctcatacatgcttgacaaatctatgctcgcatacctgaaaataaaccaatagaggaatccacaaacgttagaatgttggatccgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36068392 |
aatagggcactcaatctcatacatgcttgacaaatctatgctcgcatacctgaaaataaaccaataggggaatccacaaacgttagaatgttggatccgt |
36068491 |
T |
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| Q |
312 |
tacattataaaaattctagaattgtttcaaaa |
343 |
Q |
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| T |
36068492 |
tacattataaaaaatttagaattgtttcaaaa |
36068523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 27593625 - 27593340
Alignment:
| Q |
30 |
taaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttga------tcaactattgttacattttct |
123 |
Q |
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| T |
27593625 |
taaatattaccatagattttctcattaactaatattaaattggtttgttcaacattttgaccatttcatttgaatttaatcaactattgttatattatct |
27593526 |
T |
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| Q |
124 |
cattagaacaaaattttca-taaaactacccatatttgcagtaataaataaggaactctagcattaataataaattacataccaaagcaaatagggcact |
222 |
Q |
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| T |
27593525 |
cattagaacaaaatttacagtaaaatttattatatttgcagtaataaataaggaaatctagcattaattataaattacataccaaggcaaatagggcact |
27593426 |
T |
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| Q |
223 |
caatctcataca----tgcttgacaaatctatgctcgcatacctgaaaataaac--caatagaggaatccacaaacgttagaatgt |
302 |
Q |
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| T |
27593425 |
caatctcatgtatgtttgtttgacaaatctatgctcacatatttgtaaataaacatcaatagaggaatccaaaaatattagaatgt |
27593340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 35145418 - 35145542
Alignment:
| Q |
17 |
catatgtataatgtaaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttgatcaactattgttac |
116 |
Q |
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| T |
35145418 |
catatatataatctaaatattactgtagattcccttattaactaatattaaattggtttgttcatcattttgaccaatttatttgatcaagtattgttat |
35145517 |
T |
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| Q |
117 |
attttctcattagaacaaaattttc |
141 |
Q |
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| T |
35145518 |
attttgtcattagaacaaaattttc |
35145542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 36068574 - 36068606
Alignment:
| Q |
388 |
tgaaatgaaaataaaaataaatcggaagtaacc |
420 |
Q |
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| T |
36068574 |
tgaaatgaaaataaaaataaattggaagtaacc |
36068606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 29026134 - 29026432
Alignment:
| Q |
17 |
catatgtataatgtaaatattaccgtagattttctcatcaactaatattaaattgatttcttcaacattttgaccatttcatttgatcaactattgttac |
116 |
Q |
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||||| |||||| ||||||||||| ||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
29026134 |
catatatataatctaaatattaccatagattttctcataaactgatattaaattggtttgttcaacattttgaccatttcatttgattatatattgttac |
29026233 |
T |
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| Q |
117 |
attttctcattagaacaaaattttca-taaaactacccatatttgcagtaataaataaggaactctagcattaataataaattacataccaaagcaaata |
215 |
Q |
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||| ||| || |||||||| |||| | ||||| ||||||||||| |||||||||||||| || |||||| ||||| |||||||||||||||||||||||| |
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| T |
29026234 |
attctcttatgagaacaaattttttagtaaaattacccatatttacagtaataaataagaaaatctagccttaattataaattacataccaaagcaaata |
29026333 |
T |
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| Q |
216 |
gggcactcaatctcatacatgcttgacaaatctatgctcgcatacctgaaaataa--accaat-----agaggaatccacaaacgttagaatgttggat |
307 |
Q |
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| T |
29026334 |
gggcactcaatctcatgtatgtttgacaaatctatgctcacatatctgcaaagaagcaccaatagaggagaggaatccacaaatgttagaatgttggat |
29026432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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