View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15065_low_3 (Length: 408)
Name: NF15065_low_3
Description: NF15065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15065_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 28404999 - 28405377
Alignment:
| Q |
20 |
gctagaaggttgtttgaccaaataggtgaaagagatgtggtttcttggactgccatgattagtggttactctcatgctggatgttttcaagaagcattgg |
119 |
Q |
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| T |
28404999 |
gctagaaggttgtttgaccaaatgggtgaaagagatgtcgtttcttggactgccatgattagtggttactctcatgctggatgttttcaagaagcattgg |
28405098 |
T |
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| Q |
120 |
aattgtttgtgaaattggaaggtttggggatgaaaccggatgaggttgctgtggttgctgctctttcagcgtgtgcacggctaggcgcccttgagttggg |
219 |
Q |
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| T |
28405099 |
aattgtttgtgaaattggaaggtttggggatgaaaccggatgaggttgctgtggttgctgctctttcagcgtgcgcacggctaggcgcccttgagttggg |
28405198 |
T |
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| Q |
220 |
aagaaggattcacgttcaatatgctggtgagaattggacttgtggtctaaatagagggttcacttctgctgttgttgatatgtatgccaaatgtggaagc |
319 |
Q |
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| T |
28405199 |
tagaaggattcaccgtcaatatgctggtgagaattggacttgtagtataaatagagggttcacttctgctgttgttgatatgtatgccaaatgcggaagc |
28405298 |
T |
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| Q |
320 |
attgacactgctttggatgtgttccgcaaaacaagtaatgatatgaaaacaacttttttgtataattccattatctctg |
398 |
Q |
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| T |
28405299 |
attgacatagctttggatgtgttccgtaaaacaagtgatgataagaaaacaacttttttgtataattccattatctctg |
28405377 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 28098218 - 28098174
Alignment:
| Q |
286 |
tgctgttgttgatatgtatgccaaatgtggaagcattgacactgc |
330 |
Q |
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| T |
28098218 |
tgctgttgttgacatgtatgcaaaatgtggaagcatggagactgc |
28098174 |
T |
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