View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15066_high_1 (Length: 301)
Name: NF15066_high_1
Description: NF15066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15066_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 77 - 296
Target Start/End: Complemental strand, 22524906 - 22524686
Alignment:
| Q |
77 |
aaaacttttttcatagatatgctggatcaatcgattcatcgcattgatatgtttataactcaattattatctttgcttatttaaagcatataatttttgc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22524906 |
aaaacttttttcatagatatgctggatcaatcgattgatcctattgatatgtttataactcaattattatctttgcttatttaaagcatataatttttgc |
22524807 |
T |
|
| Q |
177 |
aaatcaatatataatgaatactctttttggtcttattacaccaatttaattacacccttcatgattttggaagtg-aaattatctatttatttataccaa |
275 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22524806 |
aaatcaataaataatgaatactctttttggtcttattacaccaatataattacacccttcatgattttggaagtgaaaattatctatttatttataccaa |
22524707 |
T |
|
| Q |
276 |
aaatcccttgtatcacctatg |
296 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22524706 |
aaatcccttgtatcacctatg |
22524686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 22535028 - 22535145
Alignment:
| Q |
82 |
ttttttcatagatatgctggatcaatcgattcatcgcattgatatgtttataactcaattattatctttgcttatt---taaagcatataatttttgcaa |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22535028 |
ttttttcatagatatgctgaatcaatcgattgatcctattgatatgtttataactcaattattatctttgcttattttataaagcatataatttttgcaa |
22535127 |
T |
|
| Q |
179 |
atcaatatataatgaata |
196 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22535128 |
atcaatatataatgaata |
22535145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22534909 - 22534982
Alignment:
| Q |
1 |
ccttcttgaaagtaagttcttctctctagtaatagatatacttttgcgaatttatgttatagatatgcttgaaa |
74 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||||||||| ||| |||||| ||||||||| |||||||||| |
|
|
| T |
22534909 |
ccttcttgaaagtaagttcttatctccagtaagagatatactattgtgaatttttgttatagacatgcttgaaa |
22534982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University