View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15066_high_2 (Length: 289)
Name: NF15066_high_2
Description: NF15066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15066_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 19857653 - 19857848
Alignment:
| Q |
18 |
gatgaaatgtgaaagacgaagaatgttggcggggttagttactagttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaa |
117 |
Q |
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| T |
19857653 |
gatgaaatgtgaaagacgaagagtgttggcggggttagttactggttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaa |
19857752 |
T |
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| Q |
118 |
aggaatatactcactccatcagaaaataaaggaggaaaactttatgagtaattataaagttaatggaaatgtgacagacagtgttttattactatg |
213 |
Q |
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| T |
19857753 |
aggaatatactcactccatcagaaaataaaggaggaaaactttacgagtaattataaagttaatggaaatgtgacagagaggcttttattactatg |
19857848 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 19857886 - 19857954
Alignment:
| Q |
216 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctgtgct |
284 |
Q |
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| T |
19857886 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctgtgct |
19857954 |
T |
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