View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15067_high_8 (Length: 235)
Name: NF15067_high_8
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15067_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2284570 - 2284349
Alignment:
| Q |
1 |
ctgtgatacaatgtcgacaaacttgttgtggttaatagatgaagaggatgatcttgtgtctgtttcaaacatgaaatcataaaa-atggatgaaattgtg |
99 |
Q |
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| T |
2284570 |
ctgtgatacaatgtcgacaaacttgttgtggttaatagatgaagaggaggatcttgtgtctgtttcaaacatgaaatcataaaagatggatgaaattgtg |
2284471 |
T |
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| Q |
100 |
tcaaatggagcacccaactttctcaaatagagcaccaactttatcctcattctccctaaatggagcttccaactttctcaaatgataggcaaaag-aata |
198 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
2284470 |
tcaaatggagcacccaactttctcaaatacagcaccaactttatcctcattctccctaaatggagcttccaactttctcaaatgagaggcaaaagaaata |
2284371 |
T |
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| Q |
199 |
ttgaaaccttgtgcatacttat |
220 |
Q |
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|||||||||| ||||||||||| |
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| T |
2284370 |
ttgaaaccttatgcatacttat |
2284349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 40677238 - 40677326
Alignment:
| Q |
133 |
accaactttatcctcattctccctaaatggagcttccaactttctcaaatgataggcaaaag-aatattgaaaccttgtgcatacttat |
220 |
Q |
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|||||||||||| ||| | | ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||||||| |||||| |
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| T |
40677238 |
accaactttatcttcactttgtctaaatggagcagccaactttctcaaatgagatgcaaaagaaatattgagtccttgtgcaaacttat |
40677326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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