View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15067_low_1 (Length: 613)
Name: NF15067_low_1
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15067_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 137 - 397
Target Start/End: Complemental strand, 44113786 - 44113526
Alignment:
| Q |
137 |
aagaataagtttacatttgatcaacaacaccgaaaaaatattgtaacaaggtttctagtgcaaattagatatcatattatcaaatataattttatattat |
236 |
Q |
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| T |
44113786 |
aagaataagtttacatttgatcaacaacaccgaaaaaatattgtaacaaggtttctagtgcaaattagatatcatattatcaaatataattttatattat |
44113687 |
T |
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| Q |
237 |
taatgaaaatgacatgtcatnnnnnnntaactctcaatcgattatggaaaaaatctaagatttgttaaattaggaaactaaaatgtatttaagtctattt |
336 |
Q |
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| T |
44113686 |
taatgaaaatgacatgtcataaaaaaataagtctcgatcgattatggaaaaaatctaagatttgttaaattaggaaactaaaatgtatttaagtctattt |
44113587 |
T |
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| Q |
337 |
aaaattagcctaataaattgatatggtgatttctctctatataagcaaaagatactttgtc |
397 |
Q |
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| T |
44113586 |
aaaattagcctaataaattgatatggtgatttctctctatataagcaaaagatactttgtc |
44113526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 481 - 604
Target Start/End: Complemental strand, 44113437 - 44113314
Alignment:
| Q |
481 |
gcaacttaattcatttaagcatgtgcatatcacttttacacaagtaactttaataagttttactaataaaactccaaaaataagttttactaatattagc |
580 |
Q |
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| T |
44113437 |
gcaacttaattcatttaagcatgtgcatatcacttttacacaagtaactttaataagttttactaataaaactccaaaaataagttttactaatattagc |
44113338 |
T |
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| Q |
581 |
cacaaagaaagtcaatagtattat |
604 |
Q |
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| T |
44113337 |
cacaaagaaagtcaatagtattat |
44113314 |
T |
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