View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15067_low_2 (Length: 439)
Name: NF15067_low_2
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15067_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 98 - 423
Target Start/End: Complemental strand, 11155315 - 11154994
Alignment:
| Q |
98 |
atttattttctcttcatctctctcttcctattatatcaacaacctatcatatatattattttattccatttatttcttctttctttaatggtacaatggt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
11155315 |
atttattttctcttcatctctctcttcctattatatcaacaacctatcacatatattattt----ccatttatttcttctttctttaatggtagaatggt |
11155220 |
T |
|
| Q |
198 |
tttaggtgtttaagaattatttttctattgtttctttgttctaatccttctattttgtaaaagggatattataataaaagttcgatcaaaagacaagtaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
11155219 |
tttaggtgtttaagaattatttttctattgtttctttgttctaatccttctattttgtaaaagggacattataataaaagttcgatcaaaagacagttaa |
11155120 |
T |
|
| Q |
298 |
cgtcaaagggataaatgaagatagatctaattgacgnnnnnnnnagaaaacgtctgttgattaattgtagtagacagttatttaccatttttagttgtat |
397 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| || |||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11155119 |
tttcaaagggacaaatgaagatatatctaattgacgttttttttaggaaacgtctgttgatcagttgtagtagacaattatttaccatttttagttgtat |
11155020 |
T |
|
| Q |
398 |
actatataggagttgcgcatggatcg |
423 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
11155019 |
aatatataggagttgcgcatggatcg |
11154994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 7566425 - 7566381
Alignment:
| Q |
102 |
attttctcttcatctctctcttcctattatatcaacaacctatca |
146 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
7566425 |
attttctctctatctctctcttcctatcatatcatcaacctatca |
7566381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University