View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15067_low_3 (Length: 408)
Name: NF15067_low_3
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15067_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 217 - 383
Target Start/End: Complemental strand, 5863851 - 5863686
Alignment:
| Q |
217 |
cattcacatatttgatatttcatatcatgatattgaatataacaagaggagacaatatttcatgatcagaaaaaccaaaatctggctcaaggaaacaagc |
316 |
Q |
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| T |
5863851 |
cattcacatatttgatatttcatatcatgatat-gaatataacaagaggagacaatatttcatgatcagaaacaccaaaatctggctcaaggaaacaagc |
5863753 |
T |
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| Q |
317 |
aatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctccatga |
383 |
Q |
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| T |
5863752 |
aatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctccatga |
5863686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 5864024 - 5863875
Alignment:
| Q |
59 |
aagtcttgatcaattttctgttttaatgcat----caaatgatataggagtggaatgataaactgctaattcagcaaaatccatatctcatttggcactt |
154 |
Q |
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| T |
5864024 |
aagtcttgatcaattttctgttttaatgcatgcatcatatgatatacgagtggaatgataaagtgctaattcagcaaaatccatatctcatttggcactt |
5863925 |
T |
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| Q |
155 |
acttggttggtccactcaataattctagtggatattcaaacgcgaccaag |
204 |
Q |
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| T |
5863924 |
acttggttggtccactcaataattctagtggatattcaaacgcgatcaag |
5863875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5864077 - 5864038
Alignment:
| Q |
1 |
atacaatggcgtagtggcgttcaatttcacgtatcaagtg |
40 |
Q |
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| T |
5864077 |
atacaatggcgtagcggcgttcaatttcacgtatcatgtg |
5864038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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