View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15067_low_4 (Length: 367)
Name: NF15067_low_4
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15067_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 24748957 - 24748611
Alignment:
| Q |
1 |
aatcgaaacttgtgtgttgtatatgcacaaatcaaaactgaaaaaatgagggtgtagaaatcggaacagtgtgagaagaacgatgaaaaaacgagaggga |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24748957 |
aatcgaaacttgtgtgttgtatatgcacaaatcgtaactgaaaaa-tgagggtgtaaaaatcggaatagtgtgagaagaacgatgaaaaaacgagaggga |
24748859 |
T |
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| Q |
101 |
ttggaacaaagaaattggaaccgtgtgagaagagatgggaacagtgggttttgattcttttgttgcactgattctaaattttcaatctttgctttcgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24748858 |
ttggaacaaagaaattggaaccgtgtgagaagagatcagaacagtgggttttgattcttttgttgcactgattctaaattttcaatctttgctttcaact |
24748759 |
T |
|
| Q |
201 |
cattgatgtaatccattggatctcaaggatttgtgtttgggnnnnnnnctattcatttttctgaaaaaatattgtatgggtttgtatttagg-ttttgga |
299 |
Q |
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||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24748758 |
catagatgtaatcctttggatctcaaggatttgtgtttgggttttttt-tattcatttttctgaaaaaatattgtatgggtttgtatttaggtttttgga |
24748660 |
T |
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| Q |
300 |
ggaatttgagaatgtagatcaatcatgagaggttgatagtggtggtgta |
348 |
Q |
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| T |
24748659 |
ggaatttgaggatgtagatcaattatgagaggttgatagtggtggtgta |
24748611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 5 - 345
Target Start/End: Complemental strand, 17371203 - 17370864
Alignment:
| Q |
5 |
gaaacttgtgtgttgtatatgcacaaatcaaaactgaaaaaatgagggtgtagaaatcggaacagtgtgagaagaacgatgaaaaaacgagagggattgg |
104 |
Q |
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| T |
17371203 |
gaaacttgtgtgttgtatatgcacaaatcgaaactgaaaaa-tgagggtgtagaaatcggaacaatgtgagaagaacgatgaaaaa-cgagagggattgg |
17371106 |
T |
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| Q |
105 |
aacaaagaaattggaaccgtgtgagaagagatgggaacagtgggttttgattcttttgttgcactgattctaaattttcaatctttgctttcgactcatt |
204 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
17371105 |
aacaaagaaattggaaccgtgtgagaagagatcggaatagtgggttttgattcttttgttgcactaattctaaattttcaatctttgctttcaactcatt |
17371006 |
T |
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| Q |
205 |
gatgtaatccattggatctcaaggatttgtgtttgggnnnnnnnctattcatttttctgaaaaaatattgtatgggtttgtatttagg-ttttggaggaa |
303 |
Q |
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| T |
17371005 |
gatgtaatccattgggtctcaaggatttgtgtttgggtttttttctattcatttttctgaaaaaatattgtatgggtttgtatttaggtttttggaggaa |
17370906 |
T |
|
| Q |
304 |
tttgagaatgtagatcaatcatgagaggttgatagtggtggt |
345 |
Q |
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||||| |||||||||| | |||||||||||||||||||||| |
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| T |
17370905 |
tttgacgatgtagatcagttatgagaggttgatagtggtggt |
17370864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42363203 - 42363337
Alignment:
| Q |
1 |
aatcgaaacttgtgtgttgtatatgcacaaatcaaaactgaaaaaatgagggtgtagaaatcggaacagtgtgagaagaacgatgaaaaaacgagaggga |
100 |
Q |
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|||| ||| ||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| | | ||| |
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| T |
42363203 |
aatcaaaatttgtgtgttgtatatacacaaatcgaaactgaaaa-atgagggtgaagaaatcggaacagtgtgagaagaacgatgagaaaacaaaaagga |
42363301 |
T |
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| Q |
101 |
ttggaacaaagaaattggaaccgtgtgagaagagat |
136 |
Q |
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| T |
42363302 |
ttggaacggagaaattggaaccgtgtgagaagagat |
42363337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 9213073 - 9213131
Alignment:
| Q |
157 |
cttttgttgcactgattctaaattttcaatctttgctttcgactcattgatgtaatcca |
215 |
Q |
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||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
9213073 |
cttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcca |
9213131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 9194957 - 9194901
Alignment:
| Q |
157 |
cttttgttgcactgattctaaattttcaatctttgctttcgactcattgatgtaatc |
213 |
Q |
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|||||||||| || ||| ||||| ||| ||||||||||| |||||||||||||||| |
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| T |
9194957 |
cttttgttgccctaattttaaatcttcgatctttgcttttaactcattgatgtaatc |
9194901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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