View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15067_low_7 (Length: 302)
Name: NF15067_low_7
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15067_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 4284599 - 4284304
Alignment:
| Q |
1 |
ttctttacaatttcgcgggcacagtttcgcagttcacattttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4284599 |
ttcttcacaatttcgcgggcacagtttcgcagttcacattttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgc |
4284500 |
T |
|
| Q |
101 |
agttccaaacctaaannnnnnnctcagtaacaatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacg |
200 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4284499 |
agttcaaaacctaaatttttt-ctcagtaataatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacg |
4284401 |
T |
|
| Q |
201 |
aacacataatcacagagcttctagaagacaccaatggcggtctcacaattctctcatcaggtctctccttatcaaaactcatctcatctctgctcct |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4284400 |
aacacataatcacagagcttctagaagacaccaatggcggcctcacaattctctcatcaggtctctccttatcaaaactcatctcatctcttctcct |
4284304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 23429478 - 23429361
Alignment:
| Q |
180 |
caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatggcggtctcacaattctctcatcaggtctctccttatcaaaact |
279 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| | ||||||||||||||||||| | | | |||||||||| | ||| ||||| ||| |||||| |
|
|
| T |
23429478 |
caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatgacaattttgcaattctctcttgtggtttctccctatgaaaact |
23429379 |
T |
|
| Q |
280 |
catctcatctctgctcct |
297 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
23429378 |
catctcctctcttctcct |
23429361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University