View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15067_low_8 (Length: 255)
Name: NF15067_low_8
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15067_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 2284613 - 2284787
Alignment:
| Q |
1 |
tattgcagtgtattttgaggcgagtaaatagtgtcgctcacaagtaatagagcatcatattctcacactagctcctatatcttgtataatgtatcaaata |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2284613 |
tattgtagtgtattttgaggcgagtaaatagtgtcgctcacaagtaatagagcatcatattcttacactagctcctatatcttgtataatgtatcaaata |
2284712 |
T |
|
| Q |
101 |
ttatgtagtattttactatgaatgaaatgctttcttatctgttatacatttgtaagtgttcttttaattcaatga |
175 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2284713 |
ttctgtagtattttactatgaatgaaatgctttcttatctgttatatatttgtaagtgttcttttaattcaatga |
2284787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 2284812 - 2284849
Alignment:
| Q |
202 |
cttcataaaaacagttttttagtgaatgcacttagtat |
239 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2284812 |
cttcataaaaacagtttttcagtgaatgcacttagtat |
2284849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University