View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15067_low_9 (Length: 244)

Name: NF15067_low_9
Description: NF15067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15067_low_9
NF15067_low_9
[»] chr2 (8 HSPs)
chr2 (17-204)||(3322714-3322901)
chr2 (28-176)||(37912185-37912333)
chr2 (17-176)||(6204281-6204431)
chr2 (28-176)||(6208360-6208499)
chr2 (24-165)||(2046822-2046964)
chr2 (17-127)||(30517114-30517224)
chr2 (104-176)||(6207330-6207400)
chr2 (24-93)||(24399426-24399495)
[»] chr8 (8 HSPs)
chr8 (24-176)||(12300121-12300273)
chr8 (24-174)||(12296142-12296292)
chr8 (24-174)||(21348251-21348402)
chr8 (24-176)||(21347606-21347755)
chr8 (105-155)||(29091841-29091891)
chr8 (48-111)||(29091170-29091234)
chr8 (55-115)||(42756670-42756730)
chr8 (24-93)||(23183740-23183809)
[»] chr4 (8 HSPs)
chr4 (24-174)||(39820518-39820668)
chr4 (24-169)||(39819405-39819550)
chr4 (27-159)||(16434017-16434149)
chr4 (17-187)||(42559816-42559975)
chr4 (51-137)||(51682008-51682094)
chr4 (51-137)||(51682394-51682479)
chr4 (51-92)||(8348717-8348758)
chr4 (17-93)||(53650887-53650963)
[»] chr5 (9 HSPs)
chr5 (24-187)||(11571266-11571422)
chr5 (28-176)||(30574929-30575077)
chr5 (17-169)||(2358555-2358708)
chr5 (37-176)||(2359233-2359373)
chr5 (24-176)||(36258248-36258401)
chr5 (46-154)||(30575601-30575708)
chr5 (24-94)||(31930567-31930637)
chr5 (51-115)||(31659006-31659070)
chr5 (24-69)||(13208674-13208719)
[»] chr6 (4 HSPs)
chr6 (17-174)||(30322376-30322533)
chr6 (49-159)||(30322922-30323032)
chr6 (51-92)||(2296437-2296478)
chr6 (17-99)||(5640650-5640734)
[»] chr1 (10 HSPs)
chr1 (24-173)||(27789283-27789432)
chr1 (25-174)||(44289342-44289492)
chr1 (104-176)||(44289844-44289917)
chr1 (55-115)||(37403318-37403378)
chr1 (57-93)||(51163823-51163859)
chr1 (24-83)||(38194256-38194315)
chr1 (27-74)||(48577628-48577675)
chr1 (49-135)||(29406827-29406913)
chr1 (51-92)||(47895452-47895493)
chr1 (17-69)||(38048399-38048451)
[»] chr3 (13 HSPs)
chr3 (17-169)||(7726399-7726552)
chr3 (24-176)||(7725736-7725889)
chr3 (40-174)||(35651473-35651610)
chr3 (17-93)||(2780284-2780360)
chr3 (17-79)||(2779703-2779765)
chr3 (51-172)||(35652120-35652244)
chr3 (105-155)||(2779772-2779822)
chr3 (24-69)||(42153143-42153188)
chr3 (51-122)||(40935868-40935940)
chr3 (51-124)||(23691626-23691699)
chr3 (51-124)||(23710065-23710138)
chr3 (51-124)||(23728521-23728594)
chr3 (51-124)||(23746977-23747050)
[»] chr7 (9 HSPs)
chr7 (28-176)||(33670880-33671027)
chr7 (17-93)||(1468434-1468510)
chr7 (24-176)||(45551947-45552099)
chr7 (24-176)||(45554735-45554884)
chr7 (24-79)||(1469033-1469088)
chr7 (105-155)||(1468976-1469026)
chr7 (35-93)||(34994899-34994957)
chr7 (49-135)||(31238869-31238955)
chr7 (37-74)||(34350489-34350526)
[»] scaffold0517 (1 HSPs)
scaffold0517 (55-115)||(4698-4758)
[»] scaffold0499 (1 HSPs)
scaffold0499 (24-156)||(1084-1215)
[»] scaffold0059 (1 HSPs)
scaffold0059 (51-93)||(8956-8998)
[»] scaffold0013 (1 HSPs)
scaffold0013 (51-93)||(236400-236442)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 3322901 - 3322714
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||    
T  3322901 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgaaaataatttccagtcattagattaaaaacaatgaatgagattaaaacacc 3322802  T
Q  117 acttaagtgactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacgtgtgcttcttcctcatggtgcttggacg 204  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3322801 acttaagtgactcatgtgccaggcatgtgactattctctccctcttttccatcattcacgtgcgcttcttcctcatggtgcttggacg 3322714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 37912333 - 37912185
Alignment:
Q  28 atattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgac 127  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||||||| ||||||  |||||||||||||| || ||||||||||| ||||||| ||||    
T  37912333 atatcacatgagaatgtgtaacttatgtgagaatggtgagaataaattgtagtcatcggattaaaagcaatggattagattaaaacatcacttaaatgac 37912234  T
Q  128 tcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 176  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  37912233 tcatgtgccaagcatgtgaccattctcttcctcttttccatccttcacg 37912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 6204281 - 6204431
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacacc 116  Q
    ||||||| ||||||| ||| |||||||  || |||||||||||||||||||||| |||||||| ||| |||||||  |         |||||||||||||    
T  6204281 atatatatggcatatcacatgagaatgagtatcttatgtgagaatggtgagaatgaattgcagccataagattaagtg---------agattaaaacacc 6204371  T
Q  117 acttaagtgactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 176  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6204372 acttaaatgactcatgtgccaagcatgtgaccattctctcccttttttccatcattcacg 6204431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 6208360 - 6208499
Alignment:
Q  28 atattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgac 127  Q
    |||| ||| |||||||| || |||||||||||||||||||||| |||||||  ||| |||||||  |         ||||||||||||||||||||||||    
T  6208360 atatcacatgagaatgggtatcttatgtgagaatggtgagaatgaattgcaaccatcagattaagtg---------agattaaaacaccacttaagtgac 6208450  T
Q  128 tcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 176  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6208451 tcatgtgccaagcatgtgaccattctctcccttttttccatcattcacg 6208499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 2046964 - 2046822
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| |||  ||||||| || ||||||||| |||| |||||||||||| ||  | | |||||||||||||||  | ||||||||||| ||||||||    
T  2046964 gggcatatcacataagaatgggtatcttatgtgaaaatgatgagaataaattacacccgtcagattaaaagcaatgggtgagattaaaacaacacttaag 2046865  T
Q  124 tgactcatgtgccaggcatgtgacc-attctctccctcttttc 165  Q
    ||||||||||||||  ||||||||| |||||||||||||||||    
T  2046864 tgactcatgtgccaaacatgtgaccaattctctccctcttttc 2046822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 30517114 - 30517224
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacacc 116  Q
    ||||||||||||||| ||| |||||||  ||| ||||||||||||| |||||||||||||||| |||  ||||||||| |||| || |||||||||||||    
T  30517114 atatatagggcatatcacatgagaatgagtaatttatgtgagaatgatgagaataaattgcagccatcggattaaaagtaatggattagattaaaacacc 30517213  T
Q  117 acttaagtgac 127  Q
    |||||||||||    
T  30517214 acttaagtgac 30517224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 6207400 - 6207330
Alignment:
Q  104 agattaaaacaccacttaagtgactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 176  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  6207400 agattaaaacaccac--aagtgattcatgtgccaagcatgtgaccattttatccctcttttccatcattcacg 6207330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 24399495 - 24399426
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||||| ||| |||||||  ||||||||||||||||||| ||||| |||| ||| |||  ||||||||    
T  24399495 gggcatatcacatgagaatgagtaacttatgtgagaatggtaagaatgaattacagccatcggattaaaa 24399426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 12300273 - 12300121
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||||||||||||     
T  12300273 gggcatatcacatgagaatggctaacttatgtgagaatggtgagaataaattgcagccatcggattaaaagcaatgaatgagattaaaacaccacttaaa 12300174  T
Q  124 tgactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 176  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12300173 ttactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 12300121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 12296142 - 12296292
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||||||||||||    
T  12296142 gggcatatcacatgagaatggctaacttatgtgagaatggtgagaataaattgcagccatcggattaaaagcaatgaatgagattaaaacaccacttaag 12296241  T
Q  124 tgactcatgtgccaggcatgtgaccattctctccctcttttccatcattca 174  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  12296242 tgactcatgtgccaagcatgtgaccattctctctctcttttccatcattca 12296292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 21348402 - 21348251
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||| || ||||||||||||||||||||||||||| ||| | | |||||||||  ||||  | |||||||| || ||| | |     
T  21348402 gggcatatcacatgagaatgggtatcttatgtgagaatggtgagaataaattacagccgtcagattaaaaataatgggtgagattaaagcatcacctgaa 21348303  T
Q  124 tgactcatgtgccaggcatgtgacca-ttctctccctcttttccatcattca 174  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  21348302 tgactcatgtgccaagcatgtgaccagttctctccctcttttccatcattca 21348251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 21347606 - 21347755
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||| | || ||||||||||||||||||||||||||| ||| | | |||||||||  ||||  | |||||||| || |||||||     
T  21347606 gggcatatcacatgagaataggtatcttatgtgagaatggtgagaataaattacagccgtcagattaaaaataatgggtgagattaaagcatcacttaaa 21347705  T
Q  124 tgactcatgtgccaggcatgtgacc-attctctccctcttttccatcattcacg 176  Q
    ||||||||||     |||||||||| ||||||||| ||||||| ||| ||||||    
T  21347706 tgactcatgt----agcatgtgaccaattctctccatcttttcaatcgttcacg 21347755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 29091891 - 29091841
Alignment:
Q  105 gattaaaacaccacttaagtgactcatgtgccaggcatgtgaccattctct 155  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  29091891 gattaaaacaccacttaaatgactcatgtgccaaacatgtgaccattctct 29091841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 29091170 - 29091234
Alignment:
Q  48 acttatgtgagaatggtgagaataaattgcagtcattagatt-aaaagcaatgaatcagattaaa 111  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||| | ||||||||    
T  29091170 acttatgtgagaatggtgagaataaattgcagccatcagattgaaaaggaatgactaagattaaa 29091234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 42756670 - 42756730
Alignment:
Q  55 tgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacac 115  Q
    ||||||||||||||||||||||||| |||||||||||||  || | || ||||||||||||    
T  42756670 tgagaatggtgagaataaattgcagccattagattaaaattaagggataagattaaaacac 42756730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 23183740 - 23183809
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||||| ||| |||||||| ||||||||||||||||| |  ||||||||| ||  |||||||| ||||    
T  23183740 gggcatatcacatgagaatgggtaacttatgtgagaatgataggaataaattccaaccattagatcaaaa 23183809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 39820668 - 39820518
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||  || ||| ||||||||| |||||||| ||||||||||||||||||||    
T  39820668 gggcatattacatgagaatgactaacttatgtgagaatggtgagaataaattttagccatcagattaaaaacaatgaatgagattaaaacaccacttaag 39820569  T
Q  124 tgactcatgtgccaggcatgtgaccattctctccctcttttccatcattca 174  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39820568 tgactcatgtgccagacatgtgaccattctctccctcttttccatcattca 39820518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 39819405 - 39819550
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||  |||||||| |||||||||||||||||||||||||  ||  ||||||||||||||||| |||||||||||| |||||||    
T  39819405 gggcatatcacatgagaatgactaacttatatgagaatggtgagaataaattgcagcaatcggattaaaagcaatgaatgagattaaaacactacttaag 39819504  T
Q  124 tgactcatgtgccaggcatgtgaccattctctccctcttttccatc 169  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  39819505 tgactcatgtaccaggcatgtgaccattctctccctcttttccatc 39819550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 16434017 - 16434149
Alignment:
Q  27 catattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtga 126  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| | | |||||||||||||||||||||||    
T  16434017 catatcacatgagaatggttaacttatgtgagaatggtcagaataaattgcagtcatcagattaaaagtaataagtgagattaaaacaccacttaagtga 16434116  T
Q  127 ctcatgtgccaggcatgtgaccattctctccct 159  Q
    ||||| ||  | |||||||||||||| ||||||    
T  16434117 ctcatatgttaagcatgtgaccattccctccct 16434149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 42559816 - 42559975
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacacc 116  Q
    ||||||||||||||| ||| |||||||  ||||||||||||||||||| |||||||||||||| | |  |||||||||||||   | |||||||||||||    
T  42559816 atatatagggcatatcacatgagaatgactaacttatgtgagaatggtaagaataaattgcagccgtcggattaaaagcaataggtgagattaaaacacc 42559915  T
Q  117 acttaagtgactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacgtgtgcttcttc 187  Q
    |||||||| |||           |||||||||||||||||||||||||||||||||| || | ||||||||    
T  42559916 acttaagtcact-----------catgtgaccattctctccctcttttccatcattcgcgcgcgcttcttc 42559975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 51682008 - 51682094
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgcca 137  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||| | ||  ||||||||||  || ||||| | ||||||||||    
T  51682008 tatgtgagaatggtgagaataaattacagccaatagattaaaagcaagggatgcgattaaaacataacctaagttagtcatgtgcca 51682094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 51682479 - 51682394
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgcca 137  Q
    ||||||||||| ||||||| ||||| ||  ||||||||||||||||||| || |||||||||||  ||| |||| | ||||||||||    
T  51682479 tatgtgagaattgtgagaa-aaattacaaccattagattaaaagcaatggataagattaaaacataactgaagttagtcatgtgcca 51682394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 8348758 - 8348717
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaa 92  Q
    |||||||||||||||||||| |||||||| |||| |||||||    
T  8348758 tatgtgagaatggtgagaatgaattgcagccattggattaaa 8348717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 53650887 - 53650963
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    ||||||||| ||||| ||| || |||||||    ||||||||||||||||||||||| | ||| | |||||||||||    
T  53650887 atatataggacatatcacatgataatggtttttgtatgtgagaatggtgagaataaactacagcctttagattaaaa 53650963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 11571266 - 11571422
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||  |||||||||||||||||||||||||||||||| |       |||||||||||||||| ||||||||||| ||||||||    
T  11571266 gggcatatcacatgagaatgactaacttatgtgagaatggtgagaataaattgcgg-------attaaaagcaatgaatgagattaaaacatcacttaag 11571358  T
Q  124 tgactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacgtgtgcttcttc 187  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||    
T  11571359 tgactcatgtgccaggcatatgaccattctctccctcttttccatcattcacgcgcgcttcttc 11571422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 30574929 - 30575077
Alignment:
Q  28 atattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgac 127  Q
    ||||| || |||||||  ||||||||||||||||||||||||||||||||||||||  ||||| |||||||| || ||||||||||| ||||||||||||    
T  30574929 atattgcatgagaatgagtaacttatgtgagaatggtgagaataaattgcagtcatcggattagaagcaatggattagattaaaacatcacttaagtgac 30575028  T
Q  128 tcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 176  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  30575029 tcatgtgccaagcatgcgaccattctcttcctcttttccatcattcacg 30575077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 2358555 - 2358708
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacacc 116  Q
    |||||| |||||||| ||| |||||||| || |||||||||||||| |||||||||||| ||  ||| ||||||||||||||| || ||||||||||| |    
T  2358555 atatatggggcatatcacatgagaatggatatcttatgtgagaatgatgagaataaattacacccatcagattaaaagcaatggatgagattaaaacaac 2358654  T
Q  117 acttaagtgactcatgtgccaggcatgtgacc-attctctccctcttttccatc 169  Q
    ||||||||||||||||| |||  ||||||||| |||||||||||||||||||||    
T  2358655 acttaagtgactcatgtaccaaacatgtgaccaattctctccctcttttccatc 2358708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 2359373 - 2359233
Alignment:
Q  37 gagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgcc 136  Q
    |||||||| || ||||||||||||||||||||||||||| ||  | | |||||||||| ||||  ||||||||||||| ||||||||| ||||||||| |    
T  2359373 gagaatgggtatcttatgtgagaatggtgagaataaattacacccgtcagattaaaagtaatgggtcagattaaaacatcacttaagtaactcatgtgtc 2359274  T
Q  137 aggcatgtgacc-attctctccctcttttccatcattcacg 176  Q
    | |||||||||| ||||||||||||||||||||| ||||||    
T  2359273 aagcatgtgaccaattctctccctcttttccatcgttcacg 2359233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 36258248 - 36258401
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||  || ||||||||||||||||||||||||||| ||  | | |||||||||| ||||  | ||||||||| | ||||||||    
T  36258248 gggcatatcacatgagaatgagtatcttatgtgagaatggtgagaataaattacaaccgtcagattaaaagtaatgggtaagattaaaatatcacttaag 36258347  T
Q  124 tgactcatgtgccaggcatgtgacc-attctctccctcttttccatcattcacg 176  Q
    ||||||||||||||  ||||||||| |||||||||| |||||||||| ||||||    
T  36258348 tgactcatgtgccaaacatgtgaccaattctctcccccttttccatcgttcacg 36258401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 30575708 - 30575601
Alignment:
Q  46 taacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgccaggcatgtg 145  Q
    ||||||||||||||||| |||||||||||||||| |||  |||||||||||||  || | |||||||||||||||||||||| ||||||||| |||||||    
T  30575708 taacttatgtgagaatgatgagaataaattgcagccatcggattaaaagcaatagattaaattaaaacaccacttaagtgacccatgtgccaagcatgtg 30575609  T
Q  146 accattctc 154  Q
     ||||||||    
T  30575608 -ccattctc 30575601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 31930567 - 31930637
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaag 94  Q
    |||||||| ||| |||||||  || ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  31930567 gggcatatcacatgagaatgagtatcttatgtgagaatggtgagaataaattgcagccatcagattaaaag 31930637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 31659070 - 31659006
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacac 115  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||   || ||||||||||||    
T  31659070 tatgtgagaatggtgagaataaattatagtcattagattaaaatcaagcgatgagattaaaacac 31659006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 13208674 - 13208719
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaa 69  Q
    |||||||| ||| ||||||||  |||||||||||||||||||||||    
T  13208674 gggcatatcacatgagaatggacaacttatgtgagaatggtgagaa 13208719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 30322376 - 30322533
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacacc 116  Q
    ||||||||||||||| ||| |||||||  || |||||||||||||||||||||| |||||||| ||  | |||||||||||||  | |||||||||||||    
T  30322376 atatatagggcatatcacatgagaatgagtatcttatgtgagaatggtgagaatgaattgcagccaacatattaaaagcaatgggtgagattaaaacacc 30322475  T
Q  117 acttaagtgactcatgtgccaggcatgtgaccattctctccctcttttccatcattca 174  Q
    |||||||| |||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  30322476 acttaagtaactcatgtgccaagcatgtgaaaattctctccctcttttccatcattca 30322533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 30323032 - 30322922
Alignment:
Q  49 cttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgccaggcatgtgacc 148  Q
    |||||||||||||||||||||| ||||||||  || ||||||||||  |||  | |||||||||||||||||||||||||||||||||| ||||||||||    
T  30323032 cttatgtgagaatggtgagaatgaattgcagcaatcagattaaaagtgatgggtgagattaaaacaccacttaagtgactcatgtgccaagcatgtgacc 30322933  T
Q  149 attctctccct 159  Q
    | |||||||||    
T  30322932 actctctccct 30322922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 2296437 - 2296478
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaa 92  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  2296437 tatgtgagaatggtgagaatgaattgcagtaattagattaaa 2296478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 5640734 - 5640650
Alignment:
Q  17 atatataggg--catattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatg 99  Q
    ||||||||||  ||||||| | |||||| | ||||||| ||||||||||| |||||||| ||||  ||||| |||||||| ||||    
T  5640734 atatataggggacatattatatgagaataggtaacttaagtgagaatggtaagaataaactgcaaccattaaattaaaaggaatg 5640650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 27789432 - 27789283
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||  |||||||||||||||||||||||||||||||||| |||  |||||||| ||||| || ||||||||||| ||||||||    
T  27789432 gggcatatcacatgagaatgagtaacttatgtgagaatggtgagaataaattgcagccatcggattaaaaacaatggattagattaaaacatcacttaag 27789333  T
Q  124 tgactcatgtgccaggcatgtgaccattctctccctcttttccatcattc 173  Q
    ||||||||||||||  |||||||| ||||||| |||||||||||||||||    
T  27789332 tgactcatgtgccaaacatgtgactattctcttcctcttttccatcattc 27789283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 44289342 - 44289492
Alignment:
Q  25 ggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagt 124  Q
    ||||||| ||| |||||||| || |||||||||||||| |||||||||||| ||| | | |||||||||  ||||  | ||||||||||| |||||||||    
T  44289342 ggcatatcacatgagaatgggtatcttatgtgagaatgatgagaataaattacagccgtcagattaaaaataatgggtgagattaaaacatcacttaagt 44289441  T
Q  125 gactcatgtgccaggcatgtgacc-attctctccctcttttccatcattca 174  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||| ||||    
T  44289442 gactcatgtgccaagcatgtgaccaattctctccctctttttcatcgttca 44289492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 44289917 - 44289844
Alignment:
Q  104 agattaaaacaccacttaagtgactcatgtgccaggcatgtgacc-attctctccctcttttccatcattcacg 176  Q
    ||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||    
T  44289917 agattaaaacatcacttaagtgactcatgtgccaaggatgtgaccaattctctccctcttttccatcgttcacg 44289844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 37403318 - 37403378
Alignment:
Q  55 tgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacac 115  Q
    |||||||||||||||| ||||| || ||||||||||||||||| | || ||||||||||||    
T  37403318 tgagaatggtgagaatgaattgtagccattagattaaaagcaagggataagattaaaacac 37403378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 51163823 - 51163859
Alignment:
Q  57 agaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||||||||||| ||||||||||||||||||||||    
T  51163823 agaatggtgagaatgaattgcagtcattagattaaaa 51163859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 38194256 - 38194315
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcat 83  Q
    |||||||| ||| || ||||  || ||||| |||||||||||||||||||||||||||||    
T  38194256 gggcatatcacatgaaaatgagtatcttatatgagaatggtgagaataaattgcagtcat 38194315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 48577628 - 48577675
Alignment:
Q  27 catattacacgagaatggttaacttatgtgagaatggtgagaataaat 74  Q
    ||||| |||||||||||| ||||||||||||||||| | |||||||||    
T  48577628 catatcacacgagaatgggtaacttatgtgagaatgataagaataaat 48577675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 29406827 - 29406913
Alignment:
Q  49 cttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgc 135  Q
    ||||| |||||||| ||||||| |||| ||| ||| |||||||||  || | || ||||||||||| ||||||| ||| ||||||||    
T  29406827 cttatatgagaatgatgagaatgaattacagccatcagattaaaataaagggatgagattaaaacatcacttaaatgagtcatgtgc 29406913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 47895452 - 47895493
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaa 92  Q
    |||||||||||||||||||| |||||||| |||| |||||||    
T  47895452 tatgtgagaatggtgagaatgaattgcagccattggattaaa 47895493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38048451 - 38048399
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaa 69  Q
    ||||||||| ||||| ||| |||||||||| |  |||||||||||||||||||    
T  38048451 atatataggacatatcacatgagaatggtttatgtatgtgagaatggtgagaa 38048399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 7726552 - 7726399
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacacc 116  Q
    ||||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||| ||  | | |||||||||||||||  | ||||||||||| |    
T  7726552 atatatagggcatatcacatgagaatgggtatcttatgtgagaatggtgagaataaattacacccgtcagattaaaagcaatgggtgagattaaaacaac 7726453  T
Q  117 acttaagtgactcatgtgccaggcatgtga-ccattctctccctcttttccatc 169  Q
    |||||||||||||||||||||  ||||||| | |||||||||||||||||||||    
T  7726452 acttaagtgactcatgtgccaaacatgtgatcaattctctccctcttttccatc 7726399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 7725736 - 7725889
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| || ||||| || ||||||||||||||||||||||||||| ||  | | |||||||||||||||  ||||||||||||| ||||||||    
T  7725736 gggcatatcacatgataatgggtatcttatgtgagaatggtgagaataaattacacccgtcagattaaaagcaatgggtcagattaaaacatcacttaag 7725835  T
Q  124 tgactcatgtgccaggcatgtgacc-attctctccctcttttccatcattcacg 176  Q
    | ||||||||| || |||||||||| ||||||||||||||||||||| ||||||    
T  7725836 taactcatgtgtcaagcatgtgaccaattctctccctcttttccatcgttcacg 7725889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 35651473 - 35651610
Alignment:
Q  40 aatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgccagg 139  Q
    ||||| || ||||| |||||||||| |||||||||| | | ||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||| |    
T  35651473 aatgggtatcttatatgagaatggtaagaataaattactgccatcagattaaaagcaatggatgagattaaaacaccacttaaatgactcatgtgccaag 35651572  T
Q  140 ca----tgtgaccattctctccctcttttccatcattca 174  Q
    ||    ||||||| |||||||||||||||||||||||||    
T  35651573 catgcgtgtgacc-ttctctccctcttttccatcattca 35651610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 2780360 - 2780284
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  2780360 atatatggggcatatcacatgagaatggttaacttatgtgagaatggtgagaataaattacagccatcagattaaaa 2780284  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 2779703 - 2779765
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcag 79  Q
    ||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||||||    
T  2779703 atatatagggcatatcacatgagaatgactaacttatgtgagaatggtgagaataaattgcag 2779765  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 35652244 - 35652120
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaa-gcaatgaatcagattaaaacaccacttaagtgactcatgtgccaggcatgtgacca 149  Q
    |||||||||||||||||||||||   ||| | ||||||||||| | || |  | |||||||||||||||||||||||||| |||||||  ||||||| ||    
T  35652244 tatgtgagaatggtgagaataaaccacagcctttagattaaaaagtaaaggttgagattaaaacaccacttaagtgactcgtgtgccaaacatgtgatca 35652145  T
Q  150 t--tctctccctcttttccatcatt 172  Q
    |  ||||||||||| ||||||||||    
T  35652144 ttctctctccctctcttccatcatt 35652120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 2779772 - 2779822
Alignment:
Q  105 gattaaaacaccacttaagtgactcatgtgccaggcatgtgaccattctct 155  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  2779772 gattaaaacaccacttaaatgactcatgtgccaaacatgtgaccattctct 2779822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 42153143 - 42153188
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaa 69  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||    
T  42153143 gggcatatcacacgagaatgggcaacttatgtgagaatggtgagaa 42153188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 40935940 - 40935868
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattaga-ttaaaagcaatgaatcagattaaaacaccacttaa 122  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||| ||| |  | |||||||||||| ||||||    
T  40935940 tatgtgagaatggtgagaataaattgcagccataagatttaaaaacaagggttaagattaaaacacaacttaa 40935868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 23691699 - 23691626
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagt 124  Q
    |||| |||||| || ||||| |||||||| ||||||||||||| ||| | || |||||||||||| | ||||||    
T  23691699 tatgcgagaatcgtaagaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagt 23691626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 23710138 - 23710065
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagt 124  Q
    |||| |||||| || ||||| |||||||| ||||||||||||| ||| | || |||||||||||| | ||||||    
T  23710138 tatgcgagaatcgtaagaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagt 23710065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 23728594 - 23728521
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagt 124  Q
    |||| |||||| || ||||| |||||||| ||||||||||||| ||| | || |||||||||||| | ||||||    
T  23728594 tatgcgagaatcgtaagaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagt 23728521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 23747050 - 23746977
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagt 124  Q
    |||| |||||| || ||||| |||||||| ||||||||||||| ||| | || |||||||||||| | ||||||    
T  23747050 tatgcgagaatcgtaagaatgaattgcagccattagattaaaaacaagggataagattaaaacacaatttaagt 23746977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 33671027 - 33670880
Alignment:
Q  28 atattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgac 127  Q
    |||| ||| |||||||  |||||||| ||||||||||||||||||||||||| ||   |||||||||||||| || ||||||||||| ||||||| ||||    
T  33671027 atatcacatgagaatgagtaacttat-tgagaatggtgagaataaattgcagccaccggattaaaagcaatggattagattaaaacatcacttaaatgac 33670929  T
Q  128 tcatgtgccaggcatgtgaccattctctccctcttttccatcattcacg 176  Q
    |||||||||| |||||||| |||||||| | ||||||||||||||||||    
T  33670928 tcatgtgccaagcatgtgatcattctcttcttcttttccatcattcacg 33670880  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 1468434 - 1468510
Alignment:
Q  17 atatatagggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||  ||| |||||||||    
T  1468434 atatatggggcatatcacatgagaatggttaacttatgtgagaatggtgagaataaattacaaccatcagattaaaa 1468510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 45551947 - 45552099
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| | | |||||||  || ||||||||||||||||||||||||||| ||    |||||||||||  ||||  | |||||||| || ||||| |     
T  45551947 gggcatatcaaatgagaatgagtatcttatgtgagaatggtgagaataaattacatctgttagattaaaaataatgggtgagattaaagcatcacttgaa 45552046  T
Q  124 tgactcatgtgccaggcatgtgacca-ttctctccctcttttccatcattcacg 176  Q
    |||||  ||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  45552047 tgacttgtgtgccaagcatgtgaccagttctctccct-ttttccatcattcacg 45552099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 45554884 - 45554735
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||||| || |||||| |||||||||||||||||||| ||| | | |||||||||  ||||  | |||||||| || |||||||     
T  45554884 gggcatatcacatgagaatgggtatcttatgcgagaatggtgagaataaattacagccgtcagattaaaaataatgggtgagattaaagcatcacttaaa 45554785  T
Q  124 tgactcatgtgccaggcatgtgacc-attctctccctcttttccatcattcacg 176  Q
    ||||||||||     |||||||||| ||||||||| ||||||| ||| ||||||    
T  45554784 tgactcatgt----agcatgtgaccaattctctccatcttttcaatcgttcacg 45554735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 1469088 - 1469033
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcag 79  Q
    |||||||| ||| |||||||  ||||||||||||||||||||||||||||||||||    
T  1469088 gggcatatcacatgagaatgactaacttatgtgagaatggtgagaataaattgcag 1469033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 1469026 - 1468976
Alignment:
Q  105 gattaaaacaccacttaagtgactcatgtgccaggcatgtgaccattctct 155  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  1469026 gattaaaacaccacttaaatgactcatgtgccaaacatgtgaccattctct 1468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 34994899 - 34994957
Alignment:
Q  35 acgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||||||||||  |||| |||||||||||||||||| | ||| ||||||||||||||    
T  34994899 acgagaatggttattttatatgagaatggtgagaataactagcaatcattagattaaaa 34994957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 31238955 - 31238869
Alignment:
Q  49 cttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaagtgactcatgtgc 135  Q
    ||||| |||||||| ||||||| |||| ||  ||| |||||||||  || | || ||||||||||| ||||||||||| ||||||||    
T  31238955 cttatatgagaatgatgagaatgaattacaaccatcagattaaaataaagggatgagattaaaacatcacttaagtgagtcatgtgc 31238869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 34350489 - 34350526
Alignment:
Q  37 gagaatggttaacttatgtgagaatggtgagaataaat 74  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  34350489 gagaatgggtaacttatgtgagaatggtgggaataaat 34350526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 4758 - 4698
Alignment:
Q  55 tgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacac 115  Q
    |||||||||||||||| ||||| || ||||||||||||||||| | || ||||||||||||    
T  4758 tgagaatggtgagaatgaattgtagccattagattaaaagcaagggataagattaaaacac 4698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 1084 - 1215
Alignment:
Q  24 gggcatattacacgagaatggttaacttatgtgagaatggtgagaataaattgcagtcattagattaaaagcaatgaatcagattaaaacaccacttaag 123  Q
    |||||||| ||| |||||| | || |||||||||||||| | |||||||||| ||| ||| ||||| ||||||| |  | |||||||||||| |||| |     
T  1084 gggcatatcacatgagaatagatatcttatgtgagaatgataagaataaattacagccataagatttaaagcaagggctgagattaaaacacaacttca- 1182  T
Q  124 tgactcatgtgccaggcatgtgaccattctctc 156  Q
    ||| ||||||||||  ||||||| | |||||||    
T  1183 tgagtcatgtgccaatcatgtgagccttctctc 1215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 8956 - 8998
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  8956 tatgtgagaatggtgagaataaattggagccgttagattaaaa 8998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 236442 - 236400
Alignment:
Q  51 tatgtgagaatggtgagaataaattgcagtcattagattaaaa 93  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  236442 tatgtgagaatggtgagaataaattggagccgttagattaaaa 236400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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