View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15068_high_1 (Length: 315)
Name: NF15068_high_1
Description: NF15068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15068_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 51112971 - 51112661
Alignment:
| Q |
5 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
104 |
Q |
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| T |
51112971 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
51112872 |
T |
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| Q |
105 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
204 |
Q |
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| T |
51112871 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
51112772 |
T |
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| Q |
205 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaa |
304 |
Q |
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| T |
51112771 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaa |
51112672 |
T |
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| Q |
305 |
agctatgcaga |
315 |
Q |
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| T |
51112671 |
agctatgcaga |
51112661 |
T |
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