View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15068_low_1 (Length: 222)
Name: NF15068_low_1
Description: NF15068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15068_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 38853152 - 38852961
Alignment:
| Q |
18 |
aaggaacaccaatggtagtgaaattggaggaccctgatttctcatttgtgaatattaatggtgtagatgctgccatttaggtggatgacaaaaactgtgg |
117 |
Q |
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| T |
38853152 |
aaggaacatcaatggtagtgaaattggaggaccctgatttctcatttgtgaatattaatggtgtagatgctgccacttaggtggatgacaaaaactgtgg |
38853053 |
T |
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| Q |
118 |
caataatgttatacaagttatgtgggttttgcttctcagggctcattcttcattgtttatgttacttggttggcaactgtttt-tgtgattt |
208 |
Q |
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| T |
38853052 |
caataatgttatacaagttatgtgggttttgcttctcagggctcattcttcattgtttctgttacttggttggcaactgttttctgtgattt |
38852961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 2212234 - 2212348
Alignment:
| Q |
87 |
ctgccatttaggtggatgacaaaaactgtggcaataatgttatacaagttatgtgggttttgcttctcagggctcattcttcattgtttatgttacttgg |
186 |
Q |
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| T |
2212234 |
ctgccatttaggtggatgacaaaaagtgtggcaataatgctatacaagttatgtgggttttgcttctcagggctcattcttcattgtttctgttacttga |
2212333 |
T |
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| Q |
187 |
ttggcaactgttttt |
201 |
Q |
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| T |
2212334 |
ttggcaactgttttt |
2212348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 2253106 - 2253179
Alignment:
| Q |
18 |
aaggaacaccaatggtagtgaaattggaggaccctgatttctcatttgtgaatattaatggtgtagatgctgcc |
91 |
Q |
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| T |
2253106 |
aaggaacaccagtggtagtgaaattcaaggaccctgatttctcatttgtgaatattaatggtgttgatgctgcc |
2253179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 50404759 - 50404622
Alignment:
| Q |
18 |
aaggaacaccaatggtagtgaaattggaggaccctgatttctcatttgtgaatattaatggtgtagatgctgccatttagg-tggatgacaaaaactgtg |
116 |
Q |
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||||||||||| |||| |||||| |||||||||| |||||||| ||||||| |||||||| | |||||||| |||||||| | || |||||| | | |
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| T |
50404759 |
aaggaacaccagtggtggtgaaaatggaggaccccaatttctcagttgtgaagattaatggcgcagatgctg-catttaggccagtagataaaaaccgcg |
50404661 |
T |
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| Q |
117 |
gcaataatgttatacaagttatgtgggttttgcttctca |
155 |
Q |
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| T |
50404660 |
gcaagaatgctaaacaagttaggtgggttttgcttctca |
50404622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 44786897 - 44786753
Alignment:
| Q |
71 |
attaatggtgtagatgctgccatttagg-tggatgacaaaaactgtggcaataatgttatacaagttatgtgggttttgcttctcagggctcat-tcttc |
168 |
Q |
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| T |
44786897 |
attaatggtgcatacgctgccatttaggctggtggacaaaaattgcggtaagaatgtcatacaagttacgtgggttttgcttctcatggctcatcgcgcc |
44786798 |
T |
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| Q |
169 |
attgtttatgttacttggttggcaactgtt-tttgtgattttctt |
212 |
Q |
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||| || |||||||||||||||||||||| |||| ||||||||| |
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| T |
44786797 |
gttggttctgttacttggttggcaactgttctttgggattttctt |
44786753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 28334927 - 28334783
Alignment:
| Q |
71 |
attaatggtgtagatgctgccatttagg-tggatgacaaaaactgtggcaataatgttatacaagttatgtgggttttgcttctcagggctcat-tcttc |
168 |
Q |
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| T |
28334927 |
attaatggtgcatacgctgccatttaggctggtggacaaaaatagcggtaagaatgtcatacaagttacgtgggttttgcttctcaaggctcatcgcgcc |
28334828 |
T |
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| Q |
169 |
attgtttatgttacttggttggcaactgtt-tttgtgattttctt |
212 |
Q |
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||| || || ||||||||||||||||||| |||| ||||||||| |
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| T |
28334827 |
gttgattctgatacttggttggcaactgttctttgggattttctt |
28334783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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