View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15069_high_1 (Length: 914)
Name: NF15069_high_1
Description: NF15069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15069_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 25 - 571
Target Start/End: Original strand, 29039961 - 29040505
Alignment:
| Q |
25 |
atctcaaccgttaatatgagatcagatggtttaaattatataataacaaaatcagttaagaattatcttgatcgttaatcaaaatgaatgattgaaatcg |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29039961 |
atctcaaccgttaatatgagatcagatggtttaaattatataataacaaaatcagttaagaattatcttgatcgttaatcaaaatgaatgattgaaatcg |
29040060 |
T |
|
| Q |
125 |
aaaattgcagatggagttactacaccaaatcaaaatccaatatattcttttagatttgtcactcaataaattgctacattccttgtgttacttttttatg |
224 |
Q |
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| T |
29040061 |
ataattgcggatggagttactaca----atcaaaatccaatatattcttttagatttgtcactcaataaattgctacattccttgtgttactcttttatg |
29040156 |
T |
|
| Q |
225 |
tgaaggtacaagatttatgtggaagggatttcatggtctgtgagtgaaaaatatataatagcatgtgattcaatgacattgttcataaagccaagatatt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29040157 |
tgaaggtacaagatttatgtggaagggatttcatggtctgtgagtgaaaaatatataatagcatgtgattcaatgacattgttcataaagccaagatatt |
29040256 |
T |
|
| Q |
325 |
atgatttctttacaagaagcctagtaccttataagcattactggcccatcaacaagcaaaacatgtgtcaagatattaagtatgctgtagattggggcaa |
424 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29040257 |
atgatttctttacaagaagcctagtaccttataagcactactggcccatcaacaagcaaaacatgtgtcaagatattaagtatgctgttgattggggcaa |
29040356 |
T |
|
| Q |
425 |
tactcatccagggaaggtaatccctatattcc-ttcccctaatactataatattttctcatataaaatgtcaatatatgtct-ataagtaaagctcaaat |
522 |
Q |
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||| ||||||| |||||||||||||||||||| ||||| |||||||||| || || || |||||||| |||||||||| || | ||||| || ||||| |
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| T |
29040357 |
tacacatccagagaaggtaatccctatattcctttcccgtaatactatagtaattgctgttataaaatctcaatatatgcctcagaagtatagttcaaac |
29040456 |
T |
|
| Q |
523 |
gataaaagattggagagaaatttgatatgttgtgacgtgagttcgaact |
571 |
Q |
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|||||||||||||| | | ||||||||| || ||| |||||| ||||| |
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| T |
29040457 |
gataaaagattggataaacatttgatattctgggacttgagtttgaact |
29040505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 137 - 591
Target Start/End: Original strand, 29018715 - 29019164
Alignment:
| Q |
137 |
ggagttactacaccaaatcaaaatccaatatattcttttagatttgtcactcaataaattgctacattccttgtgttacttttttatgtgaaggtacaag |
236 |
Q |
| |
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|||||||||| ||||||||||||||||||| | ||||| ||||||||| | |||||||||||||| |||||||| ||||||| | |||||||||||| |
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| T |
29018715 |
ggagttactaaaccaaatcaaaatccaata----cctttaggtttgtcacttagtaaattgctacatttcttgtgttgctttttt-tatgaaggtacaag |
29018809 |
T |
|
| Q |
237 |
atttatgtggaagggatttcatggtctgtgagtgaaaaatatataatagcatgtgattcaatgacattgttcataaagccaagatattatgatttcttta |
336 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29018810 |
atttacgtggaagggagatcatggtctgtgagtgaaaaatatataatagcatgtgactcaatgacattgttcataaagccaagatattatgatttcttta |
29018909 |
T |
|
| Q |
337 |
caagaagcctagtaccttataagcattactggcccatcaacaagcaaaacatgtgtcaagatattaagtatgctgtagattggggcaatactcatccagg |
436 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29018910 |
caagaagcctagtaccttataagcactactggcccatcaacaagcaaaacatgtgtcaagatattaagtatgctgttgattggggcaatactcatccagg |
29019009 |
T |
|
| Q |
437 |
gaaggtaatccctatattccttcccctaatactataatattttctcatataaaatgtcaatatatgtctataagtaaagctcaaatgataaaagattgga |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
29019010 |
gaaggtaatccctatattccttcccctaatactataatattttctcatataaaatgtcaatacatgtctataagtaaagttcaaatgataaaagattgga |
29019109 |
T |
|
| Q |
537 |
gagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccatttctttg |
591 |
Q |
| |
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|||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
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| T |
29019110 |
gagacatttgatatgttgtgacgtaagttcgaattcgcaattctctatttctttg |
29019164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 607 - 899
Target Start/End: Original strand, 29041160 - 29041452
Alignment:
| Q |
607 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041160 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
29041259 |
T |
|
| Q |
707 |
attgactgaatatgcaaatctcataagatttgaaccaaaaatacctgcaggagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtata |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041260 |
attgactgaatatgcaaatctcataagatttgaaccaaaaatacctgcagaagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtata |
29041359 |
T |
|
| Q |
807 |
tggagggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattttatttatgatgatgtc |
899 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29041360 |
tggagggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaatgttttctccttattttatttatgatgatgtc |
29041452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 611 - 883
Target Start/End: Original strand, 29019471 - 29019743
Alignment:
| Q |
611 |
cataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatctattg |
710 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29019471 |
cataattcaacaggcagaagagattggcagagaagggacaagattcatagaagagaacgtaaatatgaaattggtgtatgattatatgttacatctattg |
29019570 |
T |
|
| Q |
711 |
actgaatatgcaaatctcataagatttgaaccaaaaatacctgcaggagctattgaggtttgtactgaaaatgtggcatgttcaatggatggtatatgga |
810 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||| |||||||||||||| ||||||||||| ||||||| |||||||| |||||| ||||||||||| |
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| T |
29019571 |
actgaatatgcaaagctcatgagatttgaagcaaccatacctgcaggagcagttgaggtttgttctgaaaacttggcatgtccaatgggtggtatatgga |
29019670 |
T |
|
| Q |
811 |
gggaatttatggttgagtccatggttaagtcaccaagtgacacacctccatgtgcaacgttttctccttattt |
883 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| ||||||| | | ||||||||||||||| |
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|
| T |
29019671 |
gggagtttatggttgagtccatggttaagtcaccaagtgatacacttccatgtactatgttttctccttattt |
29019743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 505 - 586
Target Start/End: Original strand, 26919846 - 26919928
Alignment:
| Q |
505 |
tataagtaaagctcaaatgataaaaga-ttggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
586 |
Q |
| |
|
|||||||| | |||||||||||||| | ||| | ||| ||||||||||||| |||||||| |||||| ||||||||||||| |
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|
| T |
26919846 |
tataagtataactcaaatgataaaaaaattgtaaagatatttgatatgttgggacgtgaggatgaactcacaattctccattt |
26919928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 218 - 344
Target Start/End: Complemental strand, 11715378 - 11715252
Alignment:
| Q |
218 |
ttttatgtgaaggtacaagatttatgtggaagggatttcatggtctgtgagtgaaaaatatataatagcatgtgattcaatgacattgttcataaagcca |
317 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||| || ||||| |||||||| |||| |
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|
| T |
11715378 |
ttttatgttaaggtacaagatttatgcagaaggggcaacatggtctgtgagtgaaaagtacataatagcatgtgactccatgactatgttcatagagcct |
11715279 |
T |
|
| Q |
318 |
agatattatgatttctttacaagaagc |
344 |
Q |
| |
|
| || ||||||||||||||||||||| |
|
|
| T |
11715278 |
aagtactatgatttctttacaagaagc |
11715252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 554
Target Start/End: Complemental strand, 39992223 - 39992176
Alignment:
| Q |
507 |
taagtaaagctcaaatgataaaagattggagagaaatttgatatgttg |
554 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
39992223 |
taagtaaaactcaaatgataaagaattgcagagaaatttgatatgttg |
39992176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 586
Target Start/End: Original strand, 15091290 - 15091360
Alignment:
| Q |
516 |
ctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
586 |
Q |
| |
|
|||| ||| ||||| |||| | ||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
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| T |
15091290 |
ctcagatggtaaaatattgcaaagacatttgatatgttggggcgtgagtttgaactcacaattctccattt |
15091360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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