View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15069_high_2 (Length: 437)
Name: NF15069_high_2
Description: NF15069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15069_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 31798707 - 31798290
Alignment:
| Q |
16 |
atcttatgacaaagccactcaccatgtgacttgcaatctagttttgttttattttatttataacaaaggacacactattttgatgctattgttatttgca |
115 |
Q |
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| T |
31798707 |
atcttatgacaaagccactcaccatgtgacttgcaatctagttttgttttattttat----aacaaaggacacgttattttgatgctattgttatttgca |
31798612 |
T |
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| Q |
116 |
atgaagagggtagatcatttttaaaatgnnnnnnnaatcattggtgtaacgtatccaataattttgtttatggttaatttttgttcgagaatccggctga |
215 |
Q |
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| T |
31798611 |
atgaagaaggtagatcatttttaaaatgtttttttaatcattggtgtaacgtatccaataattttgtttatggctaacttttgttcgagaatccggctga |
31798512 |
T |
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| Q |
216 |
tcatctttaatgttacataataatgttttttccatccacaaagttcgaatttgggatcttacttaagaggtttaagttaagtttcacgcgaaccaatgta |
315 |
Q |
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| T |
31798511 |
tcatctttaatgttacataataatattttttccatccacaaagttccaatttgagatcttacttaagggatttaagttaagtttcacgcgaaccaatgta |
31798412 |
T |
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| Q |
316 |
atgcaactttggtaaagcatccctaaaactttggtaatataacttaaatgaaatcttctcacataatcatannnnnnncatctacaaagttcgaatatga |
415 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
31798411 |
atgtaactttggtaaagcatccctaaaactttggtaatataacttaaatgaagtcttctcacataatcatatttttttcatctacaaagttcgaatatga |
31798312 |
T |
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| Q |
416 |
gatcttacttaagggatccgag |
437 |
Q |
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| T |
31798311 |
gatcttacttaaggaatccgag |
31798290 |
T |
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