View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15069_high_3 (Length: 357)
Name: NF15069_high_3
Description: NF15069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15069_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 175 - 357
Target Start/End: Original strand, 29533691 - 29533873
Alignment:
| Q |
175 |
agggtatgaagttgaagttttaatcacgtgtagttaatttctgaaaatcatgttgatttgaaacattcaatatttgatcatacgcagattcaccaaaatt |
274 |
Q |
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| T |
29533691 |
agggtatgaagttggagttttaatcacgtgtagttaatttctgaaaatcatgttgatttgaaacattcaatatttgatcatacgcagattcaccaaaatt |
29533790 |
T |
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| Q |
275 |
tcataaagcattacattcctttttgttttcctaggtcaattatgcttttggggtgttgttattactgaaatcactgttccttt |
357 |
Q |
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| T |
29533791 |
tcataaagcgttacattcctttttgttttcctaggtcattcatgcttttggggtgttgttattactgaaatcactgttccttt |
29533873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 29533497 - 29533592
Alignment:
| Q |
16 |
ataagaatcaaatctt--tatgtttatgtaagatcgtttagatgagatgacacgagtcttttttatattggattcaaatctagcattggtctacgc |
109 |
Q |
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| T |
29533497 |
ataagaatcaaatcttcgtatgtttacataagatcgtttagatgaaatgacacgagtctcttttatattggatttaaatctagcatcggtctacgc |
29533592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 39401227 - 39401192
Alignment:
| Q |
43 |
aagatcgtttagatgagatgacacgagtctttttta |
78 |
Q |
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| T |
39401227 |
aagaacgtttagatgagatgacacgagtctttttta |
39401192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 29597455 - 29597491
Alignment:
| Q |
42 |
taagatcgtttagatgagatgacacgagtctttttta |
78 |
Q |
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| T |
29597455 |
taagagcgtttagatgagatgacacgagtttttttta |
29597491 |
T |
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