View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15069_high_6 (Length: 326)
Name: NF15069_high_6
Description: NF15069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15069_high_6 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 101 - 326
Target Start/End: Complemental strand, 36136791 - 36136566
Alignment:
| Q |
101 |
tggatatgatcagggctgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccc |
200 |
Q |
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| T |
36136791 |
tggatatgatcagggctgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccc |
36136692 |
T |
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| Q |
201 |
tcttagagaaccaatcacaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataa |
300 |
Q |
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| T |
36136691 |
tcttagagaaccaatcacaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaatag |
36136592 |
T |
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| Q |
301 |
ttagttacaaatataattgaatcaat |
326 |
Q |
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| T |
36136591 |
ttagttacaaatataactgaatcaat |
36136566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 36136879 - 36136845
Alignment:
| Q |
13 |
aatataaaggtatgttaaataagcactatagtggt |
47 |
Q |
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| T |
36136879 |
aatataaaggtatgttaaataagcactatagtggt |
36136845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 117 - 321
Target Start/End: Complemental strand, 41339643 - 41339447
Alignment:
| Q |
117 |
tgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccctcttagagaaccaatc |
216 |
Q |
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| T |
41339643 |
tgatctggagaattgtccgaattttcttgctcattaacagaactacttgagccttcaacttgacgtgatgcttcttctttaccctctaagagaaccaagc |
41339544 |
T |
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| Q |
217 |
acaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataattagttacaaatataa |
316 |
Q |
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| T |
41339543 |
acaagcaaaggcac--------ttattataatccatagttttatatttataatgatatcctcatgaaaagttatagagaaatagtttgttacaaatctaa |
41339452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 22630048 - 22629965
Alignment:
| Q |
243 |
tataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataattagttacaaatataattgaatcaat |
326 |
Q |
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||||||||| |||||||||||||||||||||||| || |||| || ||| ||| | |||||||||||| ||| ||||||||| |
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| T |
22630048 |
tataatcaatagttatatatttataatgatatccttatgaaaaatttaagtgaaaaagttagttacaaatctaactgaatcaat |
22629965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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