View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15069_high_7 (Length: 319)

Name: NF15069_high_7
Description: NF15069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15069_high_7
NF15069_high_7
[»] chr3 (6 HSPs)
chr3 (121-309)||(39916374-39916563)
chr3 (221-305)||(33801029-33801113)
chr3 (221-307)||(39624635-39624721)
chr3 (221-305)||(39919010-39919094)
chr3 (1-67)||(39916261-39916327)
chr3 (243-305)||(26662908-26662970)
[»] chr5 (3 HSPs)
chr5 (220-307)||(26591313-26591400)
chr5 (220-307)||(26599435-26599522)
chr5 (221-305)||(12903194-12903278)
[»] chr7 (3 HSPs)
chr7 (221-307)||(23259702-23259788)
chr7 (221-305)||(39303966-39304050)
chr7 (222-290)||(23259935-23260003)
[»] chr1 (3 HSPs)
chr1 (221-307)||(10450661-10450747)
chr1 (220-305)||(7147393-7147478)
chr1 (220-308)||(31412165-31412252)
[»] scaffold0856 (1 HSPs)
scaffold0856 (220-305)||(2600-2685)
[»] chr8 (7 HSPs)
chr8 (221-305)||(9944205-9944289)
chr8 (220-305)||(37694997-37695082)
chr8 (220-305)||(37699520-37699605)
chr8 (220-305)||(37683114-37683199)
chr8 (221-305)||(34580866-34580949)
chr8 (221-305)||(39570784-39570867)
chr8 (227-305)||(34578125-34578202)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 39916374 - 39916563
Alignment:
Q  121 caagaagctgatcgtgaaatgttgttatgtcagcggaaattgcaaagcaaaggagttggagagaga--acaaaatacagcattaaaagtnnnnnnnntaa 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||        |||    
T  39916374 caagaagctgatcgtgaaatgttgttatgtcggcggaaattgcaaagcaaatgagttggagagagagaacaaaatacagcattaaaagtaaaataa-taa 39916472  T
Q  219 gatggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctttg 309  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39916473 gttggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctttg 39916563  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 33801029 - 33801113
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801029 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 33801113  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 39624635 - 39624721
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39624635 tggggtgagagaggctcgaactctcgacctcaggattactcagcagctatgagacctacgcgctagccaactgcgccaccacccctt 39624721  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 39919010 - 39919094
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  39919010 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaactgcgccaccacccc 39919094  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 39916261 - 39916327
Alignment:
Q  1 catggtcaatcaataaatgaaaaaatgatcacttatttatttattggtggcagatattttttgaaag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39916261 catggtcaatcaataaatgaaaaaatgatcacttatttatttattggtggcagatattttttgaaag 39916327  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 26662970 - 26662908
Alignment:
Q  243 ctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  26662970 ctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 26662908  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 26591400 - 26591313
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26591400 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 26591313  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 26599435 - 26599522
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599435 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 26599522  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 12903278 - 12903194
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12903278 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 12903194  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 23259788 - 23259702
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259788 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 23259702  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 39304050 - 39303966
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39304050 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 39303966  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 23260003 - 23259935
Alignment:
Q  222 ggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaa 290  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23260003 ggggtgagagaggctcgaactctcgaccacaggattactcagaagctatgagacctacgcgctagccaa 23259935  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 10450747 - 10450661
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10450747 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 10450661  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 7147393 - 7147478
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  7147393 atggggtgagagaggctcgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 7147478  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 31412165 - 31412252
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccaccccttt 308  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31412165 atggggtgagagaggctcaaactctcgacctcaggattact-agaagctatgagacctacgcgctagccaactgcgccaccaccccttt 31412252  T

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Target: scaffold0856 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 2600 - 2685
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2600 atggggtgagagaggctcgaactctcgacctcaggataactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 2685  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 9944205 - 9944289
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944205 tggggtgagagaggctcgaactctcgacctcaggatcactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 9944289  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 37695082 - 37694997
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37695082 atggggtgagagaggctcgaactctcgacctcaggatcactcagaagctatgagacctacgcgctagccaactgcgccatcacccc 37694997  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 37699605 - 37699520
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37699605 atggggtgagagaggctcaaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 37699520  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 37683199 - 37683114
Alignment:
Q  220 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  37683199 atggggtgagagaggcttgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcaccaccacccc 37683114  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 34580866 - 34580949
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||    
T  34580866 tggggtgagagaggctcgaactctcgacctcaggataactctta-gctatgagacctacgcgctagccaactgcgccaccacccc 34580949  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 39570867 - 39570784
Alignment:
Q  221 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||    
T  39570867 tggggtgagagaggctcgaactctcgacctcaggataactctta-gctatgagacctacgcgctagccaactgcgccaccacccc 39570784  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 34578125 - 34578202
Alignment:
Q  227 gagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 305  Q
    |||||||||||||||||||||||||||||| ||||  | |||||||||||||| | |||||||||||||||||||||||    
T  34578125 gagagaggctcgaactctcgacctcaggataactctta-gctatgagacctacacactagccaactgcgccaccacccc 34578202  T

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