View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_high_10 (Length: 413)
Name: NF1506_high_10
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 14496427 - 14496040
Alignment:
| Q |
16 |
tacccaccataatattttctccatgtttttaatatttgtatcttagccaaattaactaatttaaattannnnnnnncaggtcagccctgagctctatggg |
115 |
Q |
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|||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14496427 |
tacctaccataatattttctccatgttttaaatttttgtatcttagccaaattaactaatttaaattattatttttcaggtcagccctgagctctatggg |
14496328 |
T |
|
| Q |
116 |
gacagttaccctagattctttacttattggacggtaagtataaaattcaataaagaaaagggagagaagttatatactataaatacataaattataaacc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14496327 |
gacagttaccctagattctttacttattggacggtaagtataaaactcaataaagaaaagggagagaagttatatactataaatacataa-ttataaacc |
14496229 |
T |
|
| Q |
216 |
tttgcttgaagtgtaagttaagataagaagacattcaataatgaaaataaataatgaagaaatagtgatttttatttgcagagtgatgcatatcaagcaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14496228 |
tttgcttgaagtgtaagttaagataagaagacattcaataatgaaaataaataataaaaaaatattgatttttatttgcagagtgatgcatatcaagcaa |
14496129 |
T |
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| Q |
316 |
ctggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctccaacttcttcatat |
404 |
Q |
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| T |
14496128 |
ctggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctccaacttcttcatat |
14496040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 29212994 - 29212881
Alignment:
| Q |
291 |
ttgcagagtgatgcatatcaagcaactggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctc |
390 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||| || ||| ||||||||||| || ||||| |||| |
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| T |
29212994 |
ttgcagactgatgcatatcaaggaactggatgctacaatttactttgctctggctttgttcaaactagcagtaatattgcaattggagcagcaatttctc |
29212895 |
T |
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| Q |
391 |
caacttcttcatat |
404 |
Q |
| |
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|||||||| ||||| |
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| T |
29212894 |
caacttctacatat |
29212881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 29213182 - 29213119
Alignment:
| Q |
92 |
caggtcagccctgagctctatggggacagttaccctagattctttacttattggacggtaagta |
155 |
Q |
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| T |
29213182 |
caggtcagcccagagctctatggggatagctaccctagattctttacttattggacggtaagta |
29213119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 404
Target Start/End: Original strand, 29637471 - 29637584
Alignment:
| Q |
291 |
ttgcagagtgatgcatatcaagcaactggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctc |
390 |
Q |
| |
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||||||| |||||||||| ||| ||||| |||||||||| | | || || | |||||||||||||| |||||||||||||||||| || ||||| |||| |
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| T |
29637471 |
ttgcagactgatgcatatgaaggtactgggtgctacaattcactttgctcagactttgttcaaactaccaataaaattgcaattggagcagcaatttctc |
29637570 |
T |
|
| Q |
391 |
caacttcttcatat |
404 |
Q |
| |
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|||||||| ||||| |
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| T |
29637571 |
caacttctacatat |
29637584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 29254895 - 29254985
Alignment:
| Q |
314 |
aactggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctccaacttcttcatat |
404 |
Q |
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||||||||||||| ||||| | || | |||||||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||| |
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| T |
29254895 |
aactggatgctacgatttactatgcccaggctttgttcaaactaacaaaaaaattgcaattggaagtgcaatttctccaacttctacatat |
29254985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 29227402 - 29227488
Alignment:
| Q |
318 |
ggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctccaacttcttcatat |
404 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||| |||||||||||| |||| ||||| || ||||||| |||| ||||| |
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| T |
29227402 |
ggatgctacaatttattatgcccaggctttgttcaaactagtaataaaattgcacttggagctgcgatttctccaatttctacatat |
29227488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 342 - 404
Target Start/End: Original strand, 29246666 - 29246728
Alignment:
| Q |
342 |
ggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctccaacttcttcatat |
404 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| || |||| ||||||| |||| ||||| |
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| T |
29246666 |
ggctttgttcaaactaacaataaatttgcaattggaactccaatttctccaatttctacatat |
29246728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 36692461 - 36692499
Alignment:
| Q |
291 |
ttgcagagtgatgcatatcaagcaactggatgctacaat |
329 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||| |
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| T |
36692461 |
ttgcagagtgatgcatatcaagctactggttgctacaat |
36692499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 43728723 - 43728630
Alignment:
| Q |
300 |
gatgcatatcaagcaactggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctccaa |
393 |
Q |
| |
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||||||||||||||||||||||| ||||||||| | |||||||| ||| ||||||| ||||||| ||| ||||| || || |||||||| |||| |
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| T |
43728723 |
gatgcatatcaagcaactggatgttacaatttactatgttctggatttattcaaacaaacaatagaatagcaataggggcagcaatctccccaa |
43728630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 34759323 - 34759265
Alignment:
| Q |
300 |
gatgcatatcaagcaactggatgctacaatttattgtgttctggctttgttcaaactaa |
358 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||||||||| |||||| | |||||||| |
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| T |
34759323 |
gatgcatatcaaacaactggatgctacaacttattgtgttcaggctttatccaaactaa |
34759265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 26429939 - 26429870
Alignment:
| Q |
293 |
gcagagtgatgcatatcaagcaactggatgctacaatttattgtgttctggctttgttcaaactaacaat |
362 |
Q |
| |
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||||||||||||||||||||||||||| || || ||| | | |||||||||||| |||||| ||||||| |
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| T |
26429939 |
gcagagtgatgcatatcaagcaactggttgttataatctcctttgttctggctttattcaaattaacaat |
26429870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 30927507 - 30927414
Alignment:
| Q |
305 |
atatcaagcaactggatgctacaatttattgtgttctggctttgttcaaactaacaataaaattgcaattggtgctgcaatctctccaacttct |
398 |
Q |
| |
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|||| ||| ||||||||||||||||||| ||| | |||||||||||||||| ||| | | ||||| |||| | |||| |||||||| ||||| |
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| T |
30927507 |
atataaaggaactggatgctacaatttacgttgtccaggctttgttcaaactagcaaaacatttgcacttggaggtgcactctctccaccttct |
30927414 |
T |
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