View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_high_12 (Length: 353)
Name: NF1506_high_12
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 3268264 - 3267925
Alignment:
| Q |
1 |
cttgtaggttcaattcctgtgtctttggtgaattgctctaaccttgaaggttttgatttttctttcaataatcttagcggtgttgtcccttctagactat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3268264 |
cttgtaggttcaattcctgtgtctttggtgaattgctctaaccttgaaggttttgatttttctttcaataatcttagcggtgttgtcccttctagactat |
3268165 |
T |
|
| Q |
101 |
gtgacattcctatgttatcttatgtatcactgagaagcaatgccttatcaggtagtgtggaagagcacatttctggatgccatagtctaatgcatttgga |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3268164 |
gtgacattcctatgttatcttatgtatcacttagaagcaatgccttatcaggtagtgtggaagagcacatttctggatgccatagtctaatgcatttgga |
3268065 |
T |
|
| Q |
201 |
ttttggtagtaatagatttactgatttggctccattcagcatcctaggactgcaaaatcttacatatttcaatatatcctataatgggtttgaaggacaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3268064 |
ttttggtagtaatagatttactgatttcgctccattcagcatcctaggactgcaaaatcttacatatttcaatatatcctataatgggtttgaaggacaa |
3267965 |
T |
|
| Q |
301 |
attcctgatatcactgcatgtagtgagagattagtggtct |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3267964 |
attcctgatatcactgcatgtagtgagagattagtggtct |
3267925 |
T |
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