View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_high_2 (Length: 589)
Name: NF1506_high_2
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 40998229 - 40998770
Alignment:
| Q |
13 |
atcatcacttagattgatcaattcgatcttattttcattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttccccc |
112 |
Q |
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| T |
40998229 |
atcatcacttagattgatcaattcgatcttatttttattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttccccc |
40998328 |
T |
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| Q |
113 |
actctcaaccctcgccgtccccatttgaaaactcccataatcaagtgtttggcaagctaattcaattttacggaagtga---cacattttgaaaacttaa |
209 |
Q |
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| T |
40998329 |
actctcaaccctcgccgtccccatttgaaaactcccataattaagtgtttggtatgctaattcaattttacggaggtgatgacacattttgaaaacttaa |
40998428 |
T |
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| Q |
210 |
gttgacccaagggccaagagccaagcaatccatccaagactcaaattcatcatatttgtatggacgaaaaacacattttaacctttttataattatacac |
309 |
Q |
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| T |
40998429 |
gttgacccaagggccaagagccaagcaatccatccaagactcaaactcatcatatttgtaaggaccaaaaacacattttaacctttttataattatacag |
40998528 |
T |
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| Q |
310 |
aacacacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttacgct |
409 |
Q |
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| T |
40998529 |
aacgcacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttacgct |
40998628 |
T |
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| Q |
410 |
ctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtagaaatatgtgtggc |
509 |
Q |
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| T |
40998629 |
ctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtagaaatatgtgtggc |
40998728 |
T |
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| Q |
510 |
atgcagccaagatgtgtttgtagttttgagttgtgagccaag |
551 |
Q |
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| T |
40998729 |
atgcagccaagatgtgtttgtagttttgagttgtgagccaag |
40998770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 545 - 573
Target Start/End: Original strand, 40998782 - 40998810
Alignment:
| Q |
545 |
agccaagattctttttgactcgatattcc |
573 |
Q |
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| T |
40998782 |
agccaagattctttttgactcgatattcc |
40998810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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