View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1506_high_20 (Length: 250)

Name: NF1506_high_20
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1506_high_20
NF1506_high_20
[»] chr7 (4 HSPs)
chr7 (13-150)||(42168601-42168738)
chr7 (57-150)||(6927412-6927505)
chr7 (215-250)||(42168501-42168536)
chr7 (215-250)||(6927312-6927347)
[»] chr6 (2 HSPs)
chr6 (57-150)||(14539178-14539271)
chr6 (215-250)||(14539078-14539113)
[»] chr4 (3 HSPs)
chr4 (57-150)||(502669-502762)
chr4 (64-126)||(1031612-1031674)
chr4 (215-250)||(502569-502604)
[»] chr2 (1 HSPs)
chr2 (57-150)||(17254377-17254470)
[»] chr1 (3 HSPs)
chr1 (57-150)||(20374669-20374762)
chr1 (215-250)||(20482244-20482279)
chr1 (215-250)||(20374827-20374862)
[»] chr8 (2 HSPs)
chr8 (57-120)||(20855443-20855506)
chr8 (57-150)||(39230994-39231087)
[»] scaffold0189 (1 HSPs)
scaffold0189 (63-126)||(25504-25567)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 42168738 - 42168601
Alignment:
Q  13 aatattgacaataactcttttcatactaaaaccaaatagtaagtaatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataat 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42168738 aatattgacaataactcttttcatactaaaatcaaatagtaagtaatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataat 42168639  T
Q  113 ttaaaattcattagnnnnnnngtttcgctatcaagatc 150  Q
    ||||||||||||||       |||||||||||||||||    
T  42168638 ttaaaattcattagtttttttgtttcgctatcaagatc 42168601  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 6927505 - 6927412
Alignment:
Q  57 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  6927505 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 6927412  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 42168536 - 42168501
Alignment:
Q  215 ctatgcacaatatttctattcctaggattgaaacaa 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  42168536 ctatgcacaatatttctattcctaggattgaaacaa 42168501  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 6927347 - 6927312
Alignment:
Q  215 ctatgcacaatatttctattcctaggattgaaacaa 250  Q
    ||||||||| ||||||||||||||||||||||||||    
T  6927347 ctatgcacagtatttctattcctaggattgaaacaa 6927312  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 14539271 - 14539178
Alignment:
Q  57 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  14539271 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 14539178  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 14539113 - 14539078
Alignment:
Q  215 ctatgcacaatatttctattcctaggattgaaacaa 250  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14539113 ctatgcacagtatttctattcctaggattgaaacaa 14539078  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 502762 - 502669
Alignment:
Q  57 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  502762 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 502669  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 1031612 - 1031674
Alignment:
Q  64 gtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattag 126  Q
    |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  1031612 gtttatacaagctaaatcttctaatcaataatttggtcaaaaaaataatttaaaattcattag 1031674  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 502604 - 502569
Alignment:
Q  215 ctatgcacaatatttctattcctaggattgaaacaa 250  Q
    ||||||||| ||||||||||||||||||||||||||    
T  502604 ctatgcacagtatttctattcctaggattgaaacaa 502569  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 17254470 - 17254377
Alignment:
Q  57 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  17254470 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 17254377  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 20374669 - 20374762
Alignment:
Q  57 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 150  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  20374669 aatagcggtttatacaatctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagtttttttgtttcgctatcaagatc 20374762  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 20482244 - 20482279
Alignment:
Q  215 ctatgcacaatatttctattcctaggattgaaacaa 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  20482244 ctatgcacaatatttctattcctaggattgaaacaa 20482279  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 20374827 - 20374862
Alignment:
Q  215 ctatgcacaatatttctattcctaggattgaaacaa 250  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20374827 ctatgcacagtatttctattcctaggattgaaacaa 20374862  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 20855506 - 20855443
Alignment:
Q  57 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20855506 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaatt 20855443  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 39230994 - 39231087
Alignment:
Q  57 aatagcggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattagnnnnnnngtttcgctatcaagatc 150  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||       |||||||||||||||||    
T  39230994 aatagtggtttatacaagctaaatcttctaatcgataatttggctaaaaaaataatttaaaattcattagtttttttgtttcgctatcaagatc 39231087  T

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Target: scaffold0189 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 25504 - 25567
Alignment:
Q  63 ggtttatacaagctaaatcttctaatcgataatttggccaaagaaataatttaaaattcattag 126  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  25504 ggtttatagaagctaaatcttctaatcgataatttggcaaaagaattaatttaaaattcattag 25567  T

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