View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_high_26 (Length: 213)
Name: NF1506_high_26
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 34661294 - 34661476
Alignment:
| Q |
17 |
agctagctgttccaccaaagattgtgagtgtgtttgcagctgataccaatggcatattcaactcttgagttaggtaacttatcaagttaccattaaaacc |
116 |
Q |
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| T |
34661294 |
agctagctgttccaccaaagattgtgagtgtgtttgcagctgataccaatggcatattcaactcttgagttaggtaacttatcaagttaccattaaaacc |
34661393 |
T |
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| Q |
117 |
agtcaccgcaaatctatcacatacctcattagctgcatatatatatcaatgcactcccaattagttacactcccataatagtattat |
203 |
Q |
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| T |
34661394 |
agtcaccgcaaatctatcacatacctcattagctgc----atatatcaatgcactcccaattagttacactcccataatagtattat |
34661476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 34647129 - 34647266
Alignment:
| Q |
17 |
agctagctgttccaccaaagattgtgagtgtgtttgcagctgataccaatggcatattcaactcttgagttaggtaacttatcaagttaccattaaaacc |
116 |
Q |
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|||||| ||||||||||||| |||||||||| |||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||| | ||| || |
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| T |
34647129 |
agctagatgttccaccaaagtttgtgagtgtatttgaagcagctaccaatggcatattcaactcttgggttaggtaacttatcaagttactgtgaaatcc |
34647228 |
T |
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| Q |
117 |
agtcaccgcaaatctatcacatacctcattagctgcat |
154 |
Q |
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| T |
34647229 |
agcgcccgcaaatctatcacatacttcatttgctgcat |
34647266 |
T |
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