View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_high_7 (Length: 476)
Name: NF1506_high_7
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 641926 - 641460
Alignment:
| Q |
1 |
cttacatggatttttgagcctttgttatatctgtgacactttgctcaagtcaaaagtcagttgaaaatttgaaacaatttttt-atatttgatggacctt |
99 |
Q |
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| T |
641926 |
cttacatggatttttgagcctttgttatatctgtgacactttgatcaagtcaaaagtcatatgaaaatttgaaacactttttttatatttgatggagctt |
641827 |
T |
|
| Q |
100 |
ttcactgatggaaaaagatgtgtgacnnnnnnnnn--gtaggaaagttgaagtgaattggattgatgtaaaatgcagagatcgcgtaaagctcttcaaca |
197 |
Q |
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| T |
641826 |
ttcactgatggaaaaagatgtgtgactttttttttttgtaggaaagttgaagtgaattggattgatgtaaaatgcagagatcgcgtaaagctcttcaaca |
641727 |
T |
|
| Q |
198 |
aagaagatctttagagaaggctgcaagtgggcgaaattgtctttataaagtttctctgtctttggtttttattttgtggggattggttttcctcttcagc |
297 |
Q |
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| T |
641726 |
aagaagatctttagagaaggctgcaagtgggagaaattgtctttataaagtttctctgtctttggtttttattttgtggggattggttttcctcttcagc |
641627 |
T |
|
| Q |
298 |
ttatggataagttgtggcaacggatatggaggtatctttttctttccgatgaccttannnnnnnnnattaaaggtgttgaagtatggttttgttttggta |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
641626 |
ttatggataagttgtggcaacggatatggaggtatctttttctttccgatgaccttttttttttttattaaaggtgtttaagtatggttttgttttggta |
641527 |
T |
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| Q |
398 |
gttgactacatggacttgattttgtgattgtgttgcaagtttttgcttagttggcttatgtgatatt |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
641526 |
gttgactacatggacttgattttgtgattgtgttgcaagtttttgcttagttggcttatgtgatatt |
641460 |
T |
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