View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_low_10 (Length: 432)
Name: NF1506_low_10
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 35379829 - 35380176
Alignment:
| Q |
18 |
atggagggaccaatagtgaaatgcatggatgtgcatgtgatcaacataaagaaggtgaggggttggtcagagtagcccccctccatttttactgaattaa |
117 |
Q |
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| T |
35379829 |
atggagggaccaatagggaaatgcatggatgtgcatgtgatcaacataaagaaggtgaagggttggtcagaggagcccccctccatttttactgaattaa |
35379928 |
T |
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| Q |
118 |
tctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatctttccaaaaaagaccatgcaaaaccaccatcaactaa |
217 |
Q |
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| T |
35379929 |
tctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatctttccaaaaaagaccatgcaaaaccaccatcaactaa |
35380028 |
T |
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| Q |
218 |
aatgttgatagaatcttagcaaaatcaattatctgaaaaacctttcttattctannnnnnnnnnnnnncacctaaatgttcatatctaacagttggatgt |
317 |
Q |
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| T |
35380029 |
aatgttgatagaatcttagcaaaatcaattatctgaaaaacctttcttattctattttttatttttttcacctaaatgttcatatctaacagttggatgt |
35380128 |
T |
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| Q |
318 |
tgggggatcatcaaatgggccactgaaccctgcttgtaagtacactaa |
365 |
Q |
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| T |
35380129 |
tgggggatcatcaaatgggccactgaaccctgcttgtaagtactctaa |
35380176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 35380169 - 35380220
Alignment:
| Q |
381 |
tactctaacatttaaaagtctatgattaatagttaatacaaagccttatcat |
432 |
Q |
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| T |
35380169 |
tactctaacatttaaaagtctataattaatagttaatacaaagccttatcat |
35380220 |
T |
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