View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1506_low_12 (Length: 362)
Name: NF1506_low_12
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 139 - 354
Target Start/End: Original strand, 10724770 - 10724983
Alignment:
| Q |
139 |
tcaattgcataaatataatcaaatgggtctatgagcattaaccatagattcatgttttacatatacttgaagcaattggagtctatgaaacactgacaca |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
10724770 |
tcaattgcataaatataatcaaatgggtctacgagcattaaccatagattcatgttt-acgtatacttgaagcaattggagtctatgaaacaccgagaca |
10724868 |
T |
|
| Q |
239 |
aacatagatactcatatgttggcaccaacagtaatttgagaaaatgaaagtgatttatgtaacaacgatannnnnnnactgtcatgtcggcgacagacac |
338 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
10724869 |
aacatagatactgatatgttgacaccaatagtaatttgagaaaatgaaagtgatttatgtaacaacgata-ttttttagtgtcatgtcggcgacggacac |
10724967 |
T |
|
| Q |
339 |
caaacacacctttgat |
354 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10724968 |
tgaacacacctttgat |
10724983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 10724596 - 10724719
Alignment:
| Q |
18 |
agatgtaacacattactagttaaacacaggcacaactggatatatacaaacaaatattcaataaccaagtatgtcatacagtaaggtatatacatatatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10724596 |
agatgtaacacattactagttaaacacaggcacaactggatatatacaaacaaatattcaataaccaagtatgtcatacagtaaggtatatacatatatg |
10724695 |
T |
|
| Q |
118 |
tataaactataatagccatcatca |
141 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10724696 |
tataaactataatagccatcatca |
10724719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University