View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_low_14 (Length: 341)
Name: NF1506_low_14
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 56 - 337
Target Start/End: Original strand, 10367096 - 10367395
Alignment:
| Q |
56 |
ctactaatctcctattgattgtgttaccaaaacctaaaacccaaaacccacatcacaaca------------------taagcagcaaaaaactccgttg |
137 |
Q |
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| T |
10367096 |
ctactaatctcctattgactgtgttaccaaaacctaaaacccaaaacccacatcacaacataagcagcaaaaaaaacataagcagcaaaaaactccgttg |
10367195 |
T |
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| Q |
138 |
actgtcacaaaaccaaggttgttccaatggcaaccttcgactccttcagagacatgtacgacattgcactcaaacctcgtctcctcaacactctcatcag |
237 |
Q |
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| T |
10367196 |
actgtcacaaaaccaaggttgttccaatggcaaccttcgactccttcagagacatgtacgacattgcactcaaacctcgtctcctcaacactctcatcag |
10367295 |
T |
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| Q |
238 |
agacaatctccctacagtggaccaccccttttccaacccttcccaactctccaacgttgtctctttgatcaaaacacactctctcttatctgatgatgtc |
337 |
Q |
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| T |
10367296 |
agacaatctccctacagtggaccaccccttttccaacccttcccaactctccaacgttgtctctttgatcaaaacacactctctcttatccgaggatgtc |
10367395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 159 - 327
Target Start/End: Complemental strand, 34364706 - 34364538
Alignment:
| Q |
159 |
ttccaatggcaaccttcgactccttcagagacatgtacgacattgcactcaaacctcgtctcctcaacactctcatcagagacaatctccctacagtgga |
258 |
Q |
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||||||||||| |||| || ||||| ||||||||||||| ||||||| ||||| || | ||||||||| |||||||||| | ||||||| | ||| |
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| T |
34364706 |
ttccaatggcagcctttgagcacttcaaagacatgtacgacgttgcactgaaaccacgcttgctcaacactatcatcagagaacacctccctagcgcgga |
34364607 |
T |
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| Q |
259 |
ccaccccttttccaacccttcccaactctccaacgttgtctctttgatcaaaacacactctctcttatc |
327 |
Q |
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| T |
34364606 |
tcatcccttttccaacccttctgaactctccaaagttgtctctttgatcaaaacacactctcttttatc |
34364538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 34364823 - 34364777
Alignment:
| Q |
83 |
caaaacctaaaacccaaaacccacatcacaacataagcagcaaaaaact |
131 |
Q |
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| T |
34364823 |
caaaacctaaaacccaaaacccaca--acgacataagcagcacaaaact |
34364777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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