View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1506_low_17 (Length: 280)

Name: NF1506_low_17
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1506_low_17
NF1506_low_17
[»] chr7 (6 HSPs)
chr7 (18-280)||(4803541-4803803)
chr7 (143-223)||(37465274-37465354)
chr7 (143-223)||(6776848-6776928)
chr7 (143-221)||(37582510-37582588)
chr7 (143-221)||(37588805-37588883)
chr7 (167-220)||(49022130-49022183)
[»] chr1 (2 HSPs)
chr1 (189-277)||(23832786-23832874)
chr1 (65-132)||(30534049-30534116)
[»] chr3 (2 HSPs)
chr3 (224-280)||(37505271-37505327)
chr3 (167-220)||(37426059-37426112)
[»] chr8 (1 HSPs)
chr8 (35-140)||(29893902-29894007)
[»] chr2 (1 HSPs)
chr2 (41-140)||(38571246-38571346)
[»] chr4 (1 HSPs)
chr4 (75-132)||(44857139-44857196)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 4803803 - 4803541
Alignment:
Q  18 catagattatatagctatgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803803 catagattatatagctatgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaa 4803704  T
Q  118 ctaggatcattaaaagattttttctagctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4803703 ctaggatcattaaaagattttttctagctccaactcatgagaaagttgaaagtgtaggagcattatcatgcaccaaaccagttcactaatgttgctatgc 4803604  T
Q  218 ttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatgaggt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803603 ttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatgaggt 4803541  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 37465354 - 37465274
Alignment:
Q  143 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg 223  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37465354 agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactaatgttgctatgcttcctg 37465274  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 6776848 - 6776928
Alignment:
Q  143 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcctg 223  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  6776848 agctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactattgttgctatgcttcctg 6776928  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 37582510 - 37582588
Alignment:
Q  143 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc 221  Q
    ||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  37582510 agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatgcttcc 37582588  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 37588805 - 37588883
Alignment:
Q  143 agctccaactcatgagaaagttgaaagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttcc 221  Q
    ||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||| |||||    
T  37588805 agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttcc 37588883  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 49022183 - 49022130
Alignment:
Q  167 aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc 220  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  49022183 aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc 49022130  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 23832874 - 23832786
Alignment:
Q  189 accaaaccagttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatga 277  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23832874 accaaaccggttcactaatgttgctatgcttcctgtaggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatga 23832786  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 30534049 - 30534116
Alignment:
Q  65 atagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa 132  Q
    ||||||||| |||||| ||||| || |||||||| |||||||||| ||| | | ||||||||||||||    
T  30534049 atagctctgcaatttgattatgtttatttagcttgtgcaagttctattaggtattaggatcattaaaa 30534116  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 37505271 - 37505327
Alignment:
Q  224 taggttatttaacttcatctggtttagtagtaattggccaatggatcaaaatgaggt 280  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37505271 tagggtatttaacttcacctggtttagtagtaattggccaatggatcaaaatgaggt 37505327  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 37426059 - 37426112
Alignment:
Q  167 aagtgtaggagcataatcatgcaccaaaccagttcactaatgttgctatgcttc 220  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  37426059 aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttc 37426112  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 29894007 - 29893902
Alignment:
Q  35 tgtgaatataaattgtgtaattatgtccgcatagctctgtaatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaaga 134  Q
    ||||| |||||| ||||||||||||| |  |||||| || ||| || | ||| ||||||| ||| ||||||||| ||||  || ||||||||||||||||    
T  29894007 tgtgattataaactgtgtaattatgtgcatatagctatgcaatctgatcatgtttttttaacttgtgcaagttcggttagtaattaggatcattaaaaga 29893908  T
Q  135 tttttt 140  Q
    ||||||    
T  29893907 tttttt 29893902  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 38571246 - 38571346
Alignment:
Q  41 tataaattgtgtaattatgtccgcatagctctgtaatttgcttatgatttt-ttagcttttgcaagttctgttaagaactaggatcattaaaagattttt 139  Q
    |||||| ||||||||||||| |  ||| || || |||||| ||||| |||| ||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  38571246 tataaactgtgtaattatgtgcatataactatgcaatttgattatgttttttttagcttgtgcaagttcggttagtaattaggatcattaaaagattttt 38571345  T
Q  140 t 140  Q
    |    
T  38571346 t 38571346  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 44857196 - 44857139
Alignment:
Q  75 aatttgcttatgattttttagcttttgcaagttctgttaagaactaggatcattaaaa 132  Q
    |||||| ||||| || |||||||| ||||||||| |||| ||| ||||||||||||||    
T  44857196 aatttgattatgtttatttagcttgtgcaagttcggttaggaattaggatcattaaaa 44857139  T

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