View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1506_low_18 (Length: 274)

Name: NF1506_low_18
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1506_low_18
NF1506_low_18
[»] chr5 (17 HSPs)
chr5 (1-259)||(35539002-35539260)
chr5 (1-49)||(17997451-17997499)
chr5 (1-49)||(38935339-38935387)
chr5 (1-52)||(2196020-2196071)
chr5 (1-52)||(20758828-20758879)
chr5 (5-49)||(4883066-4883110)
chr5 (1-49)||(19395645-19395693)
chr5 (1-49)||(34373671-34373719)
chr5 (1-49)||(10511667-10511715)
chr5 (9-49)||(20350824-20350864)
chr5 (1-49)||(33931105-33931153)
chr5 (2-49)||(31295554-31295601)
chr5 (9-51)||(14387896-14387938)
chr5 (9-49)||(3086435-3086475)
chr5 (1-49)||(7286536-7286584)
chr5 (9-49)||(25695541-25695581)
chr5 (9-49)||(34719457-34719497)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-49)||(14621-14669)
[»] chr8 (19 HSPs)
chr8 (1-49)||(30827027-30827075)
chr8 (1-49)||(27273869-27273917)
chr8 (1-49)||(5836231-5836279)
chr8 (1-49)||(19394841-19394889)
chr8 (1-49)||(6300491-6300539)
chr8 (1-49)||(23966385-23966433)
chr8 (1-49)||(42785806-42785854)
chr8 (1-49)||(44940509-44940557)
chr8 (2-49)||(22332007-22332054)
chr8 (2-49)||(37029907-37029954)
chr8 (1-48)||(41629534-41629581)
chr8 (2-49)||(42060664-42060711)
chr8 (9-54)||(36778479-36778524)
chr8 (9-49)||(18375560-18375600)
chr8 (1-49)||(36597314-36597362)
chr8 (1-33)||(38994346-38994378)
chr8 (9-49)||(40586445-40586485)
chr8 (9-49)||(41158643-41158683)
chr8 (1-33)||(44600362-44600394)
[»] chr4 (30 HSPs)
chr4 (1-56)||(5271597-5271652)
chr4 (1-49)||(2777213-2777261)
chr4 (1-49)||(14828805-14828853)
chr4 (1-49)||(21353955-21354003)
chr4 (1-49)||(36857993-36858041)
chr4 (1-49)||(41983534-41983582)
chr4 (1-49)||(23479815-23479863)
chr4 (1-49)||(54331072-54331120)
chr4 (1-47)||(33502309-33502355)
chr4 (1-49)||(15642365-15642413)
chr4 (1-49)||(19830702-19830750)
chr4 (1-49)||(22115356-22115404)
chr4 (1-49)||(28134710-28134758)
chr4 (1-49)||(28974001-28974049)
chr4 (9-49)||(30527590-30527630)
chr4 (1-49)||(34055893-34055940)
chr4 (1-49)||(35494911-35494959)
chr4 (1-49)||(38009199-38009247)
chr4 (2-49)||(15521061-15521108)
chr4 (9-49)||(574179-574219)
chr4 (9-49)||(2118190-2118230)
chr4 (9-49)||(3759279-3759319)
chr4 (9-49)||(5759341-5759381)
chr4 (9-49)||(8532223-8532263)
chr4 (9-49)||(12680632-12680672)
chr4 (9-49)||(19109064-19109104)
chr4 (9-49)||(35707660-35707700)
chr4 (1-49)||(37700903-37700951)
chr4 (9-49)||(39713498-39713538)
chr4 (1-49)||(53343345-53343393)
[»] chr1 (14 HSPs)
chr1 (1-54)||(44407285-44407338)
chr1 (1-49)||(31620590-31620638)
chr1 (1-49)||(38844476-38844524)
chr1 (1-49)||(24294860-24294908)
chr1 (1-49)||(43254557-43254605)
chr1 (1-49)||(45005697-45005745)
chr1 (1-49)||(50394969-50395017)
chr1 (9-49)||(4893967-4894007)
chr1 (9-49)||(10763587-10763627)
chr1 (1-49)||(12245174-12245222)
chr1 (9-49)||(29840692-29840732)
chr1 (1-49)||(36682966-36683014)
chr1 (9-49)||(38896814-38896854)
chr1 (9-49)||(42682591-42682631)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-49)||(29641-29689)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-49)||(25616-25664)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-49)||(10856-10904)
[»] chr6 (16 HSPs)
chr6 (1-49)||(2522015-2522063)
chr6 (1-49)||(18598307-18598355)
chr6 (1-49)||(25540840-25540888)
chr6 (1-49)||(1072585-1072633)
chr6 (1-49)||(11932804-11932852)
chr6 (12-56)||(13456730-13456774)
chr6 (1-49)||(15276534-15276582)
chr6 (1-49)||(22323778-22323826)
chr6 (1-49)||(22373142-22373190)
chr6 (1-49)||(35041988-35042036)
chr6 (1-49)||(18312690-18312739)
chr6 (9-49)||(4110060-4110100)
chr6 (9-49)||(6966239-6966279)
chr6 (1-49)||(21800418-21800466)
chr6 (9-49)||(24447794-24447834)
chr6 (9-49)||(35160122-35160162)
[»] chr2 (15 HSPs)
chr2 (1-49)||(5253286-5253334)
chr2 (1-49)||(11707565-11707613)
chr2 (1-49)||(26828451-26828499)
chr2 (1-49)||(33908183-33908231)
chr2 (1-49)||(16723664-16723712)
chr2 (1-49)||(18137892-18137940)
chr2 (1-49)||(26822548-26822596)
chr2 (1-49)||(1992952-1993000)
chr2 (1-49)||(19167152-19167199)
chr2 (1-49)||(35285586-35285634)
chr2 (9-49)||(4289030-4289070)
chr2 (1-49)||(14323213-14323261)
chr2 (1-49)||(19126002-19126050)
chr2 (1-41)||(42886331-42886371)
chr2 (1-49)||(45204297-45204345)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-51)||(101632-101682)
[»] scaffold0242 (1 HSPs)
scaffold0242 (1-49)||(2711-2759)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-49)||(48528-48576)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-49)||(12216-12264)
[»] chr7 (15 HSPs)
chr7 (1-49)||(8925228-8925276)
chr7 (1-49)||(14309765-14309813)
chr7 (1-45)||(17470652-17470696)
chr7 (1-45)||(17582518-17582562)
chr7 (1-49)||(42826649-42826697)
chr7 (1-37)||(47175385-47175421)
chr7 (1-49)||(47573335-47573383)
chr7 (9-52)||(9151418-9151461)
chr7 (3-49)||(6911361-6911407)
chr7 (9-49)||(691288-691328)
chr7 (9-49)||(21669234-21669274)
chr7 (1-49)||(23762349-23762397)
chr7 (9-49)||(31896816-31896856)
chr7 (9-49)||(39278237-39278277)
chr7 (9-49)||(39647984-39648024)
[»] chr3 (23 HSPs)
chr3 (1-49)||(6103435-6103483)
chr3 (1-49)||(16342569-16342617)
chr3 (1-49)||(19353786-19353834)
chr3 (1-49)||(35087165-35087213)
chr3 (1-49)||(50770561-50770609)
chr3 (1-49)||(52462217-52462265)
chr3 (1-49)||(52852746-52852794)
chr3 (1-49)||(54934725-54934773)
chr3 (1-49)||(31368329-31368378)
chr3 (1-49)||(18741519-18741567)
chr3 (1-49)||(49113968-49114016)
chr3 (9-49)||(50742295-50742335)
chr3 (1-49)||(51249219-51249267)
chr3 (1-49)||(54513706-54513754)
chr3 (2-49)||(5252256-5252303)
chr3 (1-52)||(48988974-48989025)
chr3 (9-49)||(4137402-4137442)
chr3 (9-49)||(8396765-8396805)
chr3 (1-49)||(11597311-11597359)
chr3 (9-49)||(18688673-18688713)
chr3 (9-49)||(22477905-22477945)
chr3 (9-49)||(35861001-35861041)
chr3 (9-49)||(55290399-55290439)
[»] scaffold0069 (1 HSPs)
scaffold0069 (9-49)||(14647-14687)
[»] scaffold0057 (1 HSPs)
scaffold0057 (9-49)||(17403-17443)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 35539260 - 35539002
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaactaattaatacattaaagtttatgggacctaaactaacttgctatattaatccc 100  Q
    |||||||||||| |||||||||||||| |   |||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  35539260 ttttatcgaatatgttattgaacccgtgcttcgcacgggtttgtaactagttaatccattaaagtttatgggacctaaattaacttgctatattaatccc 35539161  T
Q  101 ttaaaattaatctttaaactttgtgggacctaaaccaacttgttatattaatcccttaaactttgtaggatttaaatcagcttgtgtagttttgcgtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35539160 ttaaaattaatctttaaactttgtgggacctaaaccaacttgttatattaatcccttaaactttgtaggatttaaatcagcttgtgtagttttgcgtgta 35539061  T
Q  201 aaccaaataacgatcgatatgcattgcttgtgtattttgaagtttatggtttaattatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35539060 aaccaaataacgatcgatatgcattgcttgtgtattttgaagtttatggtttaattatg 35539002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17997451 - 17997499
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  17997451 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 17997499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38935339 - 38935387
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  38935339 ttttatagaatacgttattgaacccgtacgaagcacgggtttgtaacta 38935387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2196020 - 2196071
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaactaatt 52  Q
    ||||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  2196020 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttataactaatt 2196071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20758828 - 20758879
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaactaatt 52  Q
    ||||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  20758828 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttataactaatt 20758879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4883066 - 4883110
Alignment:
Q  5 atcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||    
T  4883066 atcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 4883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19395645 - 19395693
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  19395645 ttttatcaaatacgttattgaacccgtgcgaagcacgggtttgtaacta 19395693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34373719 - 34373671
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  34373719 ttttatcgaatacgttattaaacccgtgcgaagcacgggtttgtaacta 34373671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10511715 - 10511667
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||||||||  ||||||||  ||||||||||    
T  10511715 ttttatcgaatacgttattgaacccgtgtgaagcacgagtttgtaacta 10511667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 20350824 - 20350864
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  20350824 aatacgttattgaacccgtgcgaagcacgggtttgtaacta 20350864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33931105 - 33931153
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  33931105 ttttatcgaatatattattgaacccgtgcgaagcacgggtttgtaacta 33931153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 31295601 - 31295554
Alignment:
Q  2 tttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||| || |||||||||||||||| |||||||||| ||||||||||    
T  31295601 tttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 31295554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 14387938 - 14387896
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaactaat 51  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||    
T  14387938 aatacgttattcaacccgtgcgaagcacgggtttgtaactaat 14387896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 3086475 - 3086435
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  3086475 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 3086435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7286536 - 7286584
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||| |||||||||| ||  |||||||||| ||||||||||    
T  7286536 ttttatcgaatatgttattgaactcgcgcgaagcacgggtttgtaacta 7286584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 25695581 - 25695541
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  25695581 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 25695541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 34719457 - 34719497
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  34719457 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 34719497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14669 - 14621
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14669 ttttatcgaatacgttattgaacccgtacgaagcacgggtttgtaacta 14621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30827027 - 30827075
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30827027 ttttatcgaatacgttattgaacccgtacgaagcacgggtttgtaacta 30827075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27273869 - 27273917
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  27273869 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 27273917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5836231 - 5836279
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  5836231 ttttatcgaatacgttattgaacccgtgcgaagcacaggtttgtaacta 5836279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19394889 - 19394841
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  19394889 ttttatcgaatacgttattgaacccctgcgaagcacgggtttgtaacta 19394841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6300539 - 6300491
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  6300539 ttttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 6300491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23966433 - 23966385
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  23966433 ttttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 23966385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42785806 - 42785854
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  42785806 ttttatcgaatacattattgaacccgtgcgaaacacgggtttgtaacta 42785854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44940509 - 44940557
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  44940509 ttttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 44940557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 22332054 - 22332007
Alignment:
Q  2 tttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||| |||||||||||||||||||| |||||||||| | ||||||||    
T  22332054 tttattgaatacgttattgaacccgtgcgaagcacgggtctgtaacta 22332007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 37029907 - 37029954
Alignment:
Q  2 tttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||| || |||||||||||||||| |||||||||| ||||||||||    
T  37029907 tttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 37029954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41629534 - 41629581
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaact 48  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||||    
T  41629534 ttttatcgaatacgttattgaacccgtgcaaagcacgaatttgtaact 41629581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 42060711 - 42060664
Alignment:
Q  2 tttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||| || |||||||||||||||| |||||||||| ||||||||||    
T  42060711 tttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 42060664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 36778479 - 36778524
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaactaattaa 54  Q
    ||||||||||| ||||||| |||||||||| |||||||||| ||||    
T  36778479 aatacgttattcaacccgtgcgaagcacgggtttgtaactagttaa 36778524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 18375600 - 18375560
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  18375600 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 18375560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36597362 - 36597314
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| |||| || ||||||||||| |||||||||| ||||||||||    
T  36597362 ttttatcaaatatgtcattgaacccgtgcgaagcacgggtttgtaacta 36597314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38994346 - 38994378
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaag 33  Q
    ||||||||||||||||||||||||||| |||||    
T  38994346 ttttatcgaatacgttattgaacccgtgcgaag 38994378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 40586485 - 40586445
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  40586485 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 40586445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 41158643 - 41158683
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  41158643 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 41158683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44600362 - 44600394
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaag 33  Q
    ||||||||||||||||||||||||||| |||||    
T  44600362 ttttatcgaatacgttattgaacccgtgcgaag 44600394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5271652 - 5271597
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaactaattaata 56  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  5271652 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaactagttaata 5271597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2777213 - 2777261
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  2777213 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 2777261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14828853 - 14828805
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  14828853 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 14828805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21353955 - 21354003
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  21353955 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 21354003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36857993 - 36858041
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  36857993 ttttatcgaatacgttattgaacccgtgcgaagcacggatttgtaacta 36858041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41983582 - 41983534
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  41983582 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 41983534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23479815 - 23479863
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  23479815 ttttatcgaatacgttattgaactcgtgcgaagcacgggtttgtaacta 23479863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54331120 - 54331072
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  54331120 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttttaacta 54331072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33502355 - 33502309
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaac 47  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||    
T  33502355 ttttatcgaatatgttattgaacccgtgcgaagcacgggtttgtaac 33502309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15642413 - 15642365
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| | |||||||| ||||| ||||    
T  15642413 ttttatcgaatacgttattgaacccgtgcaaagcacggatttgtgacta 15642365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19830750 - 19830702
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||| | |||||||||| | ||||||||    
T  19830750 ttttatcgaatacgttattgaacccatgcgaagcacgggtatgtaacta 19830702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22115404 - 22115356
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  22115404 ttttatcgaatacgttattgaatccgtgggaagcacgggtttgtaacta 22115356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28134758 - 28134710
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| ||||||||   ||||||||||    
T  28134758 ttttatcgaatacgttattgaacccgtgcgaagcacaagtttgtaacta 28134710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28974001 - 28974049
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  28974001 ttttatcaaatatgttattgaacccgtgcgaagcacgggtttgtaacta 28974049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 30527630 - 30527590
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  30527630 aatacgttattcaacccgtacgaagcacgggtttgtaacta 30527590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34055940 - 34055893
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  34055940 ttttatcgaatacgttattgaacccgtgcgaa-cacgggtttgtaacta 34055893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35494959 - 35494911
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  35494959 ttttatcgaatacgttattgaatccgtgtgaagcacgggtttgtaacta 35494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38009199 - 38009247
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||||||||  ||||||||  ||||||||||    
T  38009199 ttttatcgaatacgttattgaacccgtgtgaagcacgtgtttgtaacta 38009247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 15521061 - 15521108
Alignment:
Q  2 tttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||| || |||||||||||||||| |||||||||| ||||||||||    
T  15521061 tttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 15521108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 574219 - 574179
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  574219 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 574179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 2118190 - 2118230
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  2118190 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 2118230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 3759279 - 3759319
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  3759279 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 3759319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 5759341 - 5759381
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  5759341 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 5759381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 8532223 - 8532263
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  8532223 aatacgttattcaacccgtgcgaagcacggatttgtaacta 8532263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 12680672 - 12680632
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  12680672 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 12680632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 19109104 - 19109064
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||| |||| ||||| ||||||||||    
T  19109104 aatacgttattgaacccgtgcgaaacacggatttgtaacta 19109064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 35707700 - 35707660
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  35707700 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 35707660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37700951 - 37700903
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |   |||||| ||||||||||    
T  37700951 ttttatcgaatacgttattgaacccgtgcttcgcacggatttgtaacta 37700903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 39713538 - 39713498
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  39713538 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 39713498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53343345 - 53343393
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| | |||||| | ||| ||||||    
T  53343345 ttttatcgaatacgttattgaacccgtgcaaagcacaggtttataacta 53343393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44407285 - 44407338
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaactaattaa 54  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  44407285 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaactagttaa 44407338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31620590 - 31620638
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  31620590 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 31620638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38844524 - 38844476
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  38844524 ttttatcgaatacgttattgaacccgtacgaaacacgggtttgtaacta 38844476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24294860 - 24294908
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  24294860 ttttatcaaatacgttattgaacccgtgcgaagcacgggtttgtaacta 24294908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43254605 - 43254557
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  43254605 ttttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 43254557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45005697 - 45005745
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  45005697 ttttatcgaatatattattgaacccgtgcgaagcacgggtttgtaacta 45005745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50395017 - 50394969
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  50395017 ttttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 50394969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 4893967 - 4894007
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  4893967 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 4894007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 10763587 - 10763627
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  10763587 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 10763627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12245222 - 12245174
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||  ||||||||||||| | |||||||| ||||||||||    
T  12245222 ttttatcgaatatattattgaacccgtgcaaagcacgggtttgtaacta 12245174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 29840732 - 29840692
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  29840732 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 29840692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36682966 - 36683014
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||| ||||||||||||| ||||||| || ||| ||||||    
T  36682966 ttttatcgaatacattattgaacccgtgcgaagcatgggtttataacta 36683014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 38896814 - 38896854
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  38896814 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 38896854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 42682591 - 42682631
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  42682591 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 42682631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29689 - 29641
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  29689 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 29641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25664 - 25616
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  25664 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 25616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10856 - 10904
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  10856 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 10904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2522015 - 2522063
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  2522015 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 2522063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18598355 - 18598307
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  18598355 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttggaacta 18598307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25540840 - 25540888
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  25540840 ttttatcgaatacgttattgaactcgtgcgaagcacgggtttgtaacta 25540888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1072633 - 1072585
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||| ||||  ||||||||||    
T  1072633 ttttatcgaatacgttattgaacccgtgcgaaacacgaatttgtaacta 1072585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11932852 - 11932804
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||| ||||||||||||| |||||||||  ||||||||||    
T  11932852 ttttatcgaatacattattgaacccgtgcgaagcacgagtttgtaacta 11932804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13456774 - 13456730
Alignment:
Q  12 acgttattgaacccgtacgaagcacggttttgtaactaattaata 56  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||    
T  13456774 acgttattgaacccgtgcgaagcacgggtttgtaactagttaata 13456730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15276534 - 15276582
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||| |||||||||||||||||||| |||||||||  ||||||||||    
T  15276534 ttttattgaatacgttattgaacccgtgcgaagcacgagtttgtaacta 15276582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22323778 - 22323826
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||| |||| ||||||||| |||||||||| ||||||||||    
T  22323778 ttttatcgaatatgttactgaacccgtgcgaagcacgggtttgtaacta 22323826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22373190 - 22373142
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| ||||||||   ||||||||||    
T  22373190 ttttatcgaatacgttattgaacccgtgcgaagcacatgtttgtaacta 22373142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35041988 - 35042036
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| ||||||||||||||||||| |||| ||||| ||||||||||    
T  35041988 ttttatcaaatacgttattgaacccgtgcgaaacacgggtttgtaacta 35042036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18312690 - 18312739
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacg-aagcacggttttgtaacta 49  Q
    ||||||| ||||||||||||||||||| || |||||||| ||||||||||    
T  18312690 ttttatcaaatacgttattgaacccgtgcgaaagcacgggtttgtaacta 18312739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 4110060 - 4110100
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  4110060 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 4110100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 6966279 - 6966239
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  6966279 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 6966239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21800418 - 21800466
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||  | |||||||||| ||| ||||||    
T  21800418 ttttatcgaatacgttattgaaccaatgcgaagcacgggtttataacta 21800466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 24447794 - 24447834
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  24447794 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 24447834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 35160122 - 35160162
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  35160122 aatacgttattcaacccgtgcgaagcacggatttgtaacta 35160162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5253286 - 5253334
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  5253286 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 5253334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11707565 - 11707613
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  11707565 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 11707613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26828451 - 26828499
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  26828451 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 26828499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33908183 - 33908231
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  33908183 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaacta 33908231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16723712 - 16723664
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  16723712 ttttatcgaatacgttattgaactcgtgcgaagcacgggtttgtaacta 16723664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18137892 - 18137940
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  18137892 ttttatcgaatacgttattgaacccgtgcgaagcacaggtttgtaacta 18137940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26822548 - 26822596
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  26822548 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttttaacta 26822596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1993000 - 1992952
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  1993000 ttttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 1992952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19167199 - 19167152
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  19167199 ttttatcgaatacgttattgaacccgtgcg-agcacgggtttgtaacta 19167152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35285634 - 35285586
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  35285634 ttttatcgaatatattattgaacccgtgcgaagcacgggtttgtaacta 35285586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 4289070 - 4289030
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  4289070 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 4289030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14323261 - 14323213
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||| ||||| ||||||||||    
T  14323261 ttttatcaaaaacgttattgaacccgtgcgaaacacgggtttgtaacta 14323213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19126050 - 19126002
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |   |||||| ||||||||||    
T  19126050 ttttatcgaatacgttattgaacccgtgcttcgcacgggtttgtaacta 19126002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42886331 - 42886371
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttt 41  Q
    |||||| ||||||||||||||| |||| |||||||||||||    
T  42886331 ttttattgaatacgttattgaaaccgtgcgaagcacggttt 42886371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45204345 - 45204297
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| |||| |||||||||||||| |||||||||  ||||||||||    
T  45204345 ttttatcaaatatgttattgaacccgtgcgaagcacgagtttgtaacta 45204297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 101632 - 101682
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaactaat 51  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  101632 ttttatcgaatacattattgaacccgtgcgaagcacgggtttgtaactaat 101682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2759 - 2711
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  2759 ttttatcgaatacgttattgaacccgtgtgaagcacgggtttgtaacta 2711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48576 - 48528
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  48576 ttttatcgaatacgttattgaacccgtgcgaagcacaggtttgtaacta 48528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12264 - 12216
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  12264 ttttatcgaatacgttattgaacccgtgcgaagcacaggtttgtaacta 12216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8925276 - 8925228
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  8925276 ttttatcgaatacgttattgaacccgtgcggagcacgggtttgtaacta 8925228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14309765 - 14309813
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||| ||||||||||| |||||||||| || |||||||    
T  14309765 ttttatcgaatacgtcattgaacccgtgcgaagcacggattcgtaacta 14309813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17470652 - 17470696
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgta 45  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||    
T  17470652 ttttatcgaatacgttattgaacccctgcgaagcacgggtttgta 17470696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17582562 - 17582518
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgta 45  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||    
T  17582562 ttttatcgaatacgttattgaacccctgcgaagcacgggtttgta 17582518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42826697 - 42826649
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  42826697 ttttatcgaatacattattgaacccttgcgaagcacgggtttgtaacta 42826649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47175385 - 47175421
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacg 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  47175385 ttttatcgaatacgttattgaacccgtgcgaagcacg 47175421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47573383 - 47573335
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  47573383 ttttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 47573335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 9151418 - 9151461
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaactaatt 52  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||    
T  9151418 aatacgttattcaacccgtgcgaagcacgggtttgtaactaatt 9151461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 6911407 - 6911361
Alignment:
Q  3 ttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||| || |||||||||||||||| |||||||||| ||||||||||    
T  6911407 ttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 6911361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 691288 - 691328
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  691288 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 691328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21669274 - 21669234
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  21669274 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 21669234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23762397 - 23762349
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||| ||| ||||||||   ||||||||||    
T  23762397 ttttatcgaatacgttattgaactcgtgcgaagcacaagtttgtaacta 23762349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 31896856 - 31896816
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  31896856 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 31896816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 39278237 - 39278277
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  39278237 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 39278277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 39648024 - 39647984
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  39648024 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 39647984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6103483 - 6103435
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  6103483 ttttatcgaatacgttattgaacccgtgcgaagcacaggtttgtaacta 6103435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16342569 - 16342617
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  16342569 ttttatcgaatacgttattgaacccgtgcgaaacacgggtttgtaacta 16342617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19353786 - 19353834
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  19353786 ttttatcgaatacgttattgaacccgtgcgaagcacagatttgtaacta 19353834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35087213 - 35087165
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  35087213 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttttaacta 35087165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50770609 - 50770561
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  50770609 ttttatcgaatacgttattgaacccgtgcgaagcacgggtttttaacta 50770561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52462265 - 52462217
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  52462265 ttttatcaaatacgttattgaacccgtgcgaagcacggatttgtaacta 52462217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52852794 - 52852746
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  52852794 ttttatcgaatacgttattgaacccgtgcgaagcacgagtttgtaacta 52852746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54934725 - 54934773
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  54934725 ttttatcgaatacattattgaacccgtgcgaagcacgggtttgtaacta 54934773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31368378 - 31368329
Alignment:
Q  1 ttttatcgaatacgttattgaa-cccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  31368378 ttttatcgaatacgttattgaaccccgtgcgaagcacgggtttgtaacta 31368329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18741567 - 18741519
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| ||||| || | ||||||||||    
T  18741567 ttttatcgaatacgttattgaacccgtgcgaagtacagatttgtaacta 18741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49113968 - 49114016
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||||||||||||||||||||| || |||||||||  ||||||||||    
T  49113968 ttttatcgaatacgttattgaacctgtgcgaagcacgagtttgtaacta 49114016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 50742295 - 50742335
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  50742295 aatacgttattgaacccgtgcgaagcacgggtttgtaacta 50742335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51249219 - 51249267
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||||||| |  ||||||| ||||||||||    
T  51249219 ttttatcgaatacgttattgaacccgtgcatagcacggatttgtaacta 51249267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54513706 - 54513754
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||||||||||||  |||  ||||||||||||||||||||    
T  54513706 ttttatcgaatacgttattgaaatcgtgtgaagcacggttttgtaacta 54513754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 5252303 - 5252256
Alignment:
Q  2 tttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    |||||| || |||||||||||||||| |||||||||| ||||||||||    
T  5252303 tttatcaaaaacgttattgaacccgtgcgaagcacgggtttgtaacta 5252256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48988974 - 48989025
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaactaatt 52  Q
    ||||||| ||||||||||||||||||| |||| ||| | |||||||||||||    
T  48988974 ttttatcaaatacgttattgaacccgtgcgaaacactggtttgtaactaatt 48989025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 4137442 - 4137402
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  4137442 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 4137402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 8396765 - 8396805
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  8396765 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 8396805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11597359 - 11597311
Alignment:
Q  1 ttttatcgaatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||||| |||||||| |||| |||| ||||| ||||||||||    
T  11597359 ttttatcgaatacattattgaatccgtgcgaaacacgggtttgtaacta 11597311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 18688673 - 18688713
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  18688673 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 18688713  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 22477905 - 22477945
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  22477905 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 22477945  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 35861001 - 35861041
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  35861001 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 35861041  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 55290439 - 55290399
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| |||||||||||||||| | ||||||||||    
T  55290439 aatacgttattcaacccgtacgaagcacaggtttgtaacta 55290399  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 14647 - 14687
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  14647 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 14687  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 17443 - 17403
Alignment:
Q  9 aatacgttattgaacccgtacgaagcacggttttgtaacta 49  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  17443 aatacgttattcaacccgtgcgaagcacgggtttgtaacta 17403  T

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